9zbq
1-methyl-pseudouridine L-21 ScaI Tetrahymena Ribozyme
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9zbq |
| deposition_date | 2025-11-21 |
| title | 1-methyl-pseudouridine L-21 ScaI Tetrahymena Ribozyme |
| keywords | RNA, Tetrahymena ribozyme, m1Y, 1-methyl-pseudouridine, modified base; RNA |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 38.83 Å |
| rg_electron | 38.58 Å |
| i0 | 720407000.00 |
| molecular_weight | 126890.0 kDa |
| excluded_volume | 119560 ų |
| envelope_volume | 222660 ų |
| shell_volume | 50026 ų |
| envelope_diameter | 137.3 Å |
| shell_rg | 42.77 Å |
| envelope_rg | 37.32 Å |
| shape_rg | 38.54 Å |
| total_rg | 38.82 Å |
| total_atoms | 8380 |
| n_residues | 290 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 130.1 Å |
| rg_real | 38.70 Å |
| rg_real_error | 1.17 Å |
| i0_real | 7.2040e+08 |
| i0_real_error | 1.2120e+07 |
| rg_reciprocal | 38.79 Å |
| i0_reciprocal | 720500000.0000 |
| total_estimate | 0.8748 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 50.8 Å |
| skewness | 0.251 |
| kurtosis | -0.170 |
| angular_range | — – 0.2050 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 18140000.0000 |
| n_real_points | 42 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.816; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.994; Smooth: 0.927 |