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9zc7

5-methyl-cytidine RNA origami 6-helix bundle monomer

Method: ELECTRON MICROSCOPY D_max: 192.6 Å Quality: GOOD

SAXS Profile

P(r) Distribution

P(r) distribution for 9zc7

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1. Structure Basics

entry_id	9zc7
deposition_date	2025-11-22
title	5-methyl-cytidine RNA origami 6-helix bundle monomer
keywords	RNA, origami, 5mC, 5-methyl-cytidine, modified base; RNA
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	56.19 Å
rg_electron	56.27 Å
i0	2380570000.00
molecular_weight	235240.0 kDa
excluded_volume	221990 Å³
envelope_volume	465060 Å³
shell_volume	73958 Å³
envelope_diameter	193.2 Å
shell_rg	53.56 Å
envelope_rg	53.50 Å
shape_rg	56.21 Å
total_rg	56.31 Å
total_atoms	15516
n_residues	541
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	192.6 Å
rg_real	56.16 Å
rg_real_error	2.15 Å
i0_real	2.3810e+09
i0_real_error	4.8150e+07
rg_reciprocal	56.19 Å
i0_reciprocal	2381000000.0000
total_estimate	0.8816
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	68.8 Å
skewness	0.258
kurtosis	-0.420
angular_range	— – 0.1400 Å⁻¹
current_alpha	0.0000
highest_alpha	49150000.0000
n_real_points	29
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.867; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.854

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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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7. Files & Curves (10)