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9zc8

5-methyl-cytidine RNA origami 6-helix bundle type-1 dimer

Method: ELECTRON MICROSCOPY Dmax: 225.1 Å Quality: GOOD

SAXS Profile

SAXS profile for 9zc8

P(r) Distribution

P(r) distribution for 9zc8
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1. Structure Basics

entry_id9zc8
deposition_date2025-11-22
title5-methyl-cytidine RNA origami 6-helix bundle type-1 dimer
keywordsRNA, origami, 5mC, 5-methyl-cytidine, modified base, homodimer, dimer; RNA
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier80.31 Å
rg_electron80.72 Å
i09296000000.00
molecular_weight470510.0 kDa
excluded_volume444010 ų
envelope_volume1001800 ų
shell_volume109010 ų
envelope_diameter274.8 Å
shell_rg72.36 Å
envelope_rg76.26 Å
shape_rg80.68 Å
total_rg80.72 Å
total_atoms31034
n_residues1082
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax225.1 Å
rg_real79.10 Å
rg_real_error0.86 Å
i0_real9.1130e+09
i0_real_error1.5440e+08
rg_reciprocal78.92 Å
i0_reciprocal9260000000.0000
total_estimate0.8567
solution_quality GOOD a GOOD solution
n_peaks1
r_peak_primary83.0 Å
skewness0.289
kurtosis-0.668
angular_range— – 0.0950 Å−1
current_alpha0.7525
highest_alpha179000000.0000
n_real_points20
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 1.000; Stabil: 0.991; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.002
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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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7. Files & Curves (10)