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9zc9

5-methyl-cytidine twist corrected RNA origami 6-helix bundle monomer

Method: ELECTRON MICROSCOPY Dmax: 181.0 Å Quality: GOOD

SAXS Profile

SAXS profile for 9zc9

P(r) Distribution

P(r) distribution for 9zc9
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1. Structure Basics

entry_id9zc9
deposition_date2025-11-22
title5-methyl-cytidine twist corrected RNA origami 6-helix bundle monomer
keywordsRNA, 5-methyl-cytidine, modified base, homodimer; RNA
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier55.62 Å
rg_electron56.03 Å
i02464160000.00
molecular_weight238650.0 kDa
excluded_volume225220 ų
envelope_volume486220 ų
shell_volume79264 ų
envelope_diameter190.4 Å
shell_rg52.11 Å
envelope_rg53.19 Å
shape_rg55.97 Å
total_rg56.04 Å
total_atoms15741
n_residues545
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax181.0 Å
rg_real55.88 Å
rg_real_error1.53 Å
i0_real2.4640e+09
i0_real_error4.7460e+07
rg_reciprocal55.38 Å
i0_reciprocal2462000000.0000
total_estimate0.7990
solution_quality GOOD a GOOD solution
n_peaks1
r_peak_primary58.2 Å
skewness0.527
kurtosis-0.189
angular_range— – 0.1400 Å−1
current_alpha0.0000
highest_alpha97260000.0000
n_real_points29
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.741; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.161
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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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7. Files & Curves (10)