9zdp
Crystal structure of rubredoxin from psychrophilic bacterium Polaromonas glacialis
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9zdp |
| deposition_date | 2025-11-26 |
| title | Crystal structure of rubredoxin from psychrophilic bacterium Polaromonas glacialis |
| keywords | rubredoxin, electron transfer, psychrophilic, ELECTRON TRANSPORT; ELECTRON TRANSPORT |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 25.93 Å |
| rg_electron | 25.35 Å |
| i0 | 33337700.00 |
| molecular_weight | 42322.0 kDa |
| excluded_volume | 51817 ų |
| envelope_volume | 65905 ų |
| shell_volume | 23086 ų |
| envelope_diameter | 83.6 Å |
| shell_rg | 30.84 Å |
| envelope_rg | 25.16 Å |
| shape_rg | 25.37 Å |
| total_rg | 25.94 Å |
| total_atoms | 2913 |
| n_residues | 371 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 79.7 Å |
| rg_real | 25.89 Å |
| rg_real_error | 0.48 Å |
| i0_real | 3.3340e+07 |
| i0_real_error | 4.7470e+05 |
| rg_reciprocal | 25.91 Å |
| i0_reciprocal | 33340000.0000 |
| total_estimate | 0.7041 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 2 |
| r_peak_primary | 32.6 Å |
| skewness | 0.205 |
| kurtosis | -0.542 |
| angular_range | — – 0.3050 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 2443000.0000 |
| n_real_points | 62 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.976; Stabil: 1.000; Sysdev: 0.105; Positv: 1.000; Valcen: 0.994; Smooth: 0.915 |