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9zfy

7160 Fab in complex with Plasmodium falciparum rsCSP

Method: ELECTRON MICROSCOPY D_max: 131.3 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9zfy
deposition_date	2025-12-02
title	7160 Fab in complex with Plasmodium falciparum rsCSP
keywords	Plasmodium, malaria, CSP, Fab, homotypic, IMMUNE SYSTEM; IMMUNE SYSTEM
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	38.62 Å
rg_electron	38.96 Å
i0	149404000.00
molecular_weight	97382.0 kDa
excluded_volume	121370 Å³
envelope_volume	166540 Å³
shell_volume	38067 Å³
envelope_diameter	138.0 Å
shell_rg	41.24 Å
envelope_rg	38.52 Å
shape_rg	38.91 Å
total_rg	39.26 Å
total_atoms	6857
n_residues	876
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	131.3 Å
rg_real	39.07 Å
rg_real_error	1.51 Å
i0_real	1.4940e+08
i0_real_error	2.9190e+06
rg_reciprocal	38.79 Å
i0_reciprocal	149400000.0000
total_estimate	0.8233
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	35.2 Å
skewness	0.504
kurtosis	-0.435
angular_range	— – 0.2050 Å⁻¹
current_alpha	0.0000
highest_alpha	14350000.0000
n_real_points	42
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.758; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.750; Smooth: 0.675

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	Fab 7160 Light Chain
formula_weight	24246.1 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	H,D
atom_count	6857

DIVMTQTPLSLSVTPGQPASISCKSSQSLLDNDGKTYLYWYLQKPGQSPQLVIYEVSNRFSGVPDRFSGSGSGTDFTLKIRRVEAEDVGVYYCMQRIDLPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Cricetulus griseus

Entity 2 polymer

description	Circumsporozoite Protein
formula_weight	30232.2 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	J

YGSSSNTRVLNELNYDNAGTNLYNELEMNYYGKQENWYSLKKNSRSLGENDDGNNEDNEKLRKPKHKKLKQPADGNPDPNANPNVDPNANPNVDPNANPNVDPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNANPNKNNQGNGQGHNMPNDPNRNVDENANANSAVKNNNNEEPSDKHIKEYLNKIQNSLSTEWSPCSVTCGNGIQVRIKPGSANKPKDELDYANDIEKKICKMEKCSSVFNVVNS

Source

organism	Plasmodium falciparum
ncbi_taxonomy_id	5833
host_organism	Escherichia coli

Entity 3 polymer

description	Fab 7160 Heavy Chain
formula_weight	23402.3 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	G,C

EVQLVESGGGLVQPGRSLRVSCTTSGFTFGDYAMSWFRQAPGKGLEWVGFIRSKGYGGTPEYAASVKGRFTISRDDSKRTAYLQMNSLKTEDTAVYYCTRVGIEVSTAVYWGPGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Cricetulus griseus

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.550 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	3.55 Å
resolution_method	—
num_particles	116764

fit	/app/data/saxs_computation/zf/9zfy/9zfy.fit
pddf	/app/data/pr_computation/zf/9zfy/9zfy.pr.out
profile	/app/data/saxs_computation/zf/9zfy/9zfy.dat

7160 Fab in complex with Plasmodium falciparum rsCSP

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)