9zh9
Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 23
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9zh9 |
| deposition_date | 2025-12-03 |
| title | Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 23 |
| keywords | RNase P RNA, Geobacillus stearothermophilus, catalytic RNA, cryo-EM structure, conformational heterogeneity, RNA; RNA |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 47.08 Å |
| rg_electron | 47.50 Å |
| i0 | 846178000.00 |
| molecular_weight | 136770.0 kDa |
| excluded_volume | 127160 ų |
| envelope_volume | 239740 ų |
| shell_volume | 46242 ų |
| envelope_diameter | 164.7 Å |
| shell_rg | 46.37 Å |
| envelope_rg | 46.22 Å |
| shape_rg | 47.49 Å |
| total_rg | 47.48 Å |
| total_atoms | 9003 |
| n_residues | 417 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 165.5 Å |
| rg_real | 47.46 Å |
| rg_real_error | 1.77 Å |
| i0_real | 8.4620e+08 |
| i0_real_error | 1.7210e+07 |
| rg_reciprocal | 47.09 Å |
| i0_reciprocal | 845800000.0000 |
| total_estimate | 0.8537 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 45.1 Å |
| skewness | 0.441 |
| kurtosis | -0.439 |
| angular_range | — – 0.1650 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 20240000.0000 |
| n_real_points | 34 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.819; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.898; Smooth: 0.740 |