9zhx
Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 43
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9zhx |
| deposition_date | 2025-12-03 |
| title | Cryo-EM structure of RNase P RNA from Geobacillus stearothermophilus, conformer 43 |
| keywords | RNase P RNA, Geobacillus stearothermophilus, catalytic RNA, cryo-EM structure, conformational heterogeneity, RNA; RNA |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 48.10 Å |
| rg_electron | 48.75 Å |
| i0 | 844747000.00 |
| molecular_weight | 136690.0 kDa |
| excluded_volume | 127100 ų |
| envelope_volume | 237600 ų |
| shell_volume | 45379 ų |
| envelope_diameter | 172.9 Å |
| shell_rg | 45.99 Å |
| envelope_rg | 48.19 Å |
| shape_rg | 48.74 Å |
| total_rg | 48.69 Å |
| total_atoms | 9000 |
| n_residues | 417 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 164.9 Å |
| rg_real | 48.68 Å |
| rg_real_error | 1.84 Å |
| i0_real | 8.4470e+08 |
| i0_real_error | 1.6970e+07 |
| rg_reciprocal | 48.10 Å |
| i0_reciprocal | 844100000.0000 |
| total_estimate | 0.8313 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 45.0 Å |
| skewness | 0.521 |
| kurtosis | -0.341 |
| angular_range | — – 0.1650 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 20490000.0000 |
| n_real_points | 34 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.825; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.875; Smooth: 0.455 |