9zpx

CNGA1 channel open state in nanodisc cGMP-bound

Method: ELECTRON MICROSCOPY Dmax: 122.1 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Cyclic nucleotide-gated channel alpha-1

Homo sapiens

UniProt P29973

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 140–686 Chain B; UniProt 140–686 Chain C; UniProt 140–686 Chain D; UniProt 140–686 Not recorded PCG CYCLIC GUANOSINE MONOPHOSPHATE × 4 CLR CHOLESTEROL × 4 PCW 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE × 20 K POTASSIUM ION × 2 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.64 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

18 other PDB entries and 18 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CNGA1_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 13–559; UniProt 140–686 Author chain B; PDBConstruct 13–559; UniProt 140–686 Author chain C; PDBConstruct 13–559; UniProt 140–686 Author chain D; PDBConstruct 13–559; UniProt 140–686

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9zpx

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9zpx
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2. Structure Basics 2. Structure Basics

Entry ID entry_id9zpx
Deposition date deposition_date2025-12-17
Structure title titleCNGA1 channel open state in nanodisc cGMP-bound
Keywords keywordsCyclic nucleotide-gated channel, Rod photoreceptor, CNGA1, Ion channel, TRANSPORT PROTEIN; TRANSPORT PROTEIN
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier40.71
Radius of gyration Rg (electron density) rg_electron40.03
Forward intensity I(0) i0607832000.00
Molecular weight molecular_weight222280.0 kDa
Excluded volume excluded_volume286360 ų
Envelope volume envelope_volume378290 ų
Hydration-shell volume shell_volume76022 ų
Envelope diameter envelope_diameter121.5
Shell Rg shell_rg48.40
Envelope Rg envelope_rg38.77
Shape Rg shape_rg39.98
Total Rg total_rg40.67
Total atoms total_atoms15623
Residues n_residues1796
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax122.1
Rg (real space) rg_real40.45
Rg uncertainty (real space) rg_real_error0.94
I(0) (real space) i0_real6.0780e+08
I(0) uncertainty (real space) i0_real_error1.0330e+07
Rg (reciprocal space) rg_reciprocal40.70
I(0) (reciprocal space) i0_reciprocal608000000.0000
Solution quality estimate total_estimate0.8924
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary53.2
Skewness Skewness skewness0.032
Kurtosis Kurtosis kurtosis-0.507
Angular range angular_range— – 0.1950 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha42680000.0000
Real-space data points n_real_points40
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.920; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.960; Smooth: 0.883

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (5)

8. Citations (1)

9. Files and Curves (10)