[a3T17] Asymmetric three turn tensegrity triangle with psuedosymmetry

entry_id	9zxk
deposition_date	2026-01-04
last_revision	2026-02-25
title	[a3T17] Asymmetric three turn tensegrity triangle with psuedosymmetry
keywords	Tensegrity triangle, DNA; DNA
method	X-RAY DIFFRACTION

rg_guinier	37.42 Å
rg_electron	37.32 Å
i0	138456000.00
molecular_weight	57206.0 kDa
excluded_volume	55310 ų
envelope_volume	109510 ų
shell_volume	25890 ų
envelope_diameter	113.3 Å
shell_rg	41.02 Å
envelope_rg	36.01 Å
shape_rg	37.31 Å
total_rg	37.51 Å
total_atoms	3792
n_residues	186
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	112.3 Å
rg_real	37.39 Å
rg_real_error	1.09 Å
i0_real	1.3850e+08
i0_real_error	2.3800e+06
rg_reciprocal	37.41 Å
i0_reciprocal	138500000.0000
total_estimate	0.8722
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	37.4 Å
skewness	0.061
kurtosis	-0.929
angular_range	— – 0.2100 Å−1
current_alpha	0.0000
highest_alpha	2632000.0000
n_real_points	43
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.972; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.923; Smooth: 0.497

Unit Cell

length_a	89.460 Å
length_b	100.603 Å
length_c	100.888 Å
angle_alpha	113.13 °
angle_beta	110.06 °
angle_gamma	102.64 °
z_pdb	1

Symmetry

space_group	P 1
int_tables_number	1
crystal_system	triclinic

Refinement

resolution	5.960 Å
resolution_low	45.400 Å
r_factor	0.1499
r_work	0.1493
r_free	0.1830

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/zx/9zxk/pr_distribution.json
• pr_output /app/data/pr_computation/zx/9zxk/9zxk.pr.out
• pr_plot /app/data/visualization/pr_computation/zx/9zxk/9zxk_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/zx/9zxk/9zxk.dat
• saxs_fit /app/data/saxs_computation/zx/9zxk/9zxk.fit
• saxs_log /app/data/saxs_computation/zx/9zxk/9zxk.log
• saxs_plot /app/data/visualization/saxs_computation/zx/9zxk/9zxk_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/zx/9zxk/9zxk.fit
pddf	/app/data/pr_computation/zx/9zxk/9zxk.pr.out
profile	/app/data/saxs_computation/zx/9zxk/9zxk.dat