SAXSdb — 9zzy

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1. Structure Basics

entry_id	9zzy
deposition_date	2026-01-08
title	;ssRNA phage PRR1 virion with 3' gRNA ;
keywords	IncP dependent ssRNA phage PRR1, VIRUS; VIRUS
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	— Å
rg_electron	133.70 Å
i0	100991000000.00
molecular_weight	2678600.0 kDa
excluded_volume	3342400 Å³
envelope_volume	11937000 Å³
shell_volume	769000 Å³
envelope_diameter	323.8 Å
shell_rg	144.70 Å
envelope_rg	110.90 Å
shape_rg	133.70 Å
total_rg	133.80 Å
total_atoms	192958
n_residues	23856
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	309.4 Å
rg_real	134.30 Å
rg_real_error	0.28 Å
i0_real	1.0230e+11
i0_real_error	1.5110e+09
rg_reciprocal	160.60 Å
i0_reciprocal	114400000000.0000
total_estimate	0.8754
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	225.0 Å
skewness	-0.473
kurtosis	-0.609
angular_range	— – 0.0550 Å⁻¹
current_alpha	1.0090
highest_alpha	37850000000.0000
n_real_points	12
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.860; Stabil: 0.979; Sysdev: 1.000; Positv: 1.000; Valcen: 0.863; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	Maturation Protein
formula_weight	45913.2 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	F
atom_count	192962

GILRQTFSAENKSDWTPSTGQRMTQTNISSADVGVEYATIYRGKGRWVWVQHPEGFLFPWRMPSSYTRGHQIIDLTSSTSTITWASPFSKGSGTRTGVPFENLLNRGNWESFMESRLDMRPLLTYNEMARNNVAIRLKVGDAKVNLSVFAAEMKRAVTGLASNFITVVGLYRAVRKGDFKRVASLIKPDPRQKGFSSRDVAGRWLELNYAIIPLLNDIRGGYEYISENFEKLMTYSVSSNLKTPVPLHYVEDSSSVSMQASGFRGVRTKVHYVIDLPGLREASRVGLINPLLVGWELVPYSFVIDWLLPVGNMLEAFTATHGTKFISGTRTRWCDIDLNGTVRSQYEGYVDWPNSGLSEQPFTGKIYSISRDVLYDYPMVLPYVKNPFSTTHLINAVALIRNLFKR

Entity 2 polymer

description	;3' gRNA ;
formula_weight	42383.1 kDa
src_method	nat
entity_count	1

Polymer

type	polyribonucleotide
strand_id	AE

CCGGCGACGUUCGAGUUUUCCUAAGAGAACUUUAAAGUCGUCGGACGGGGUGUUGGAAACACCCCUCCCUCACGGGUGGAUGCUUCGGCUAUAAACAGUUCGGGAAGCUACGCUUCGCUUCCCGGACAUCCA

Entity 3 polymer

description	Coat Protein
formula_weight	14568.5 kDa
src_method	nat
entity_count	178

Polymer

type

polypeptide(L)

strand_id

;0,1,2,3,4,5,6,7,8,9,A,B,C,D,E,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x,y,z,G,H,I,J,K,L,M,N,AA,AB,AC,AD,AO,AP,AQ,AR,AS,AT,AU,AV,AW,AX,AY,AZ,Aa,Ab,Ac,Ad,Ae,Af,Ag,Ah,Ai,Aj,Ak,Al,Am,An,Ao,Ap,Aq,Ar,As,At,Au,Av,Aw,Ax,Ay,Az,A1,A2,A3,A4,A5,A6,A7,A8,A9,A0,BA,BB,BC,BD,BE,BF,BG,BH,BI,BJ,BK,BL,BM,BN,BO,BP,BQ,BR,BS,BV,BY,BZ,Bb,Bc,Bd,Bg,Bh,Bi,Bj,Bk,Bl,Bm,Bn,Bu,Bv,Bw,Bx,By,Bz,B1,B2,B3,B4,B5,B6,B7,B8,B9,B0,CA,CB,CC,CD,CH,CI,CK,CL,CM,CN,CO,CP,CQ,CR,CS,CT ;

AQLQNLVLKDREATPNDHTFVPRDIRDNVGEVVESTGVPIGESRFTISLRKTSNGRYKSTLKLVVPVVQSQTVNGIVTPVVVRTSYVTVDFDYDARSTTKERNNFVGMIADALKADKMLVHDTIVNLQGVY

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6. Citations (1)

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resolution	3.45 Å
resolution_method	—
num_particles	30437

fit	/app/data/saxs_computation/zz/9zzy/9zzy.fit
pddf	/app/data/pr_computation/zz/9zzy/9zzy.pr.out
profile	/app/data/saxs_computation/zz/9zzy/9zzy.dat

;ssRNA phage PRR1 virion with 3' gRNA ;

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

EM 3D

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)