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Protein Structures and Oligomeric States

Enter a protein name, UniProt accession or PDB ID. Name searches ask you to confirm the protein identity before related structures are queried.

Current Protein Identity：A0A6P0BW74 New Search
2PDB entries
3Biological assembly
12chain/assembly records
Main Difference Dimensions in This Set
Different construct Different mutation/modification Different assembly state Different ligand/ion Different experimental conditions Different structure-quality metrics

Difference tags compare only the current result set; every original PDB and assembly record remains separate.

Related-Structure Differences

Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.

PDB Entry Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Experimental Method Experimental Conditions Structure Quality
9IIB Crystal structure of NodD-EBD (Effector Binding Domain) in complex with hesperetin from Rhizobium leguminosarum bv. vicae 3841 Deposited 2024-06-19 Assembly 1 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count
Chain A 91–306（216 aa）
Chain D 91–306（216 aa）
Not recorded GOL GLYCEROL × 1 6JP (2S)-5,7-dihydroxy-2-(3-hydroxy-4-methoxyphenyl)-2,3-dihydro-4H-1-benzopyran-4-one × 3 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；295 K；0.05 M Tris-HCl pH 7.5, 0.2 M potassium chloride, 0.05 M magnesium chloride, 10% w/v polyethylene glycol 4,000
Resolution 2.75 Å R-free 0.252
9IIB Crystal structure of NodD-EBD (Effector Binding Domain) in complex with hesperetin from Rhizobium leguminosarum bv. vicae 3841 Deposited 2024-06-19 Assembly 2 Protein homooligomer Homooligomer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count
Chain B 91–306（216 aa）
Chain C 91–306（216 aa）
Not recorded GOL GLYCEROL × 1 6JP (2S)-5,7-dihydroxy-2-(3-hydroxy-4-methoxyphenyl)-2,3-dihydro-4H-1-benzopyran-4-one × 3 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, SITTING DROP；295 K；0.05 M Tris-HCl pH 7.5, 0.2 M potassium chloride, 0.05 M magnesium chloride, 10% w/v polyethylene glycol 4,000
Resolution 2.75 Å R-free 0.252
9X6W Crystal structure of NodD-EBD (Effector Binding Domain) from Rhizobium leguminosarum bv. vicae 3841 Deposited 2025-10-16 Assembly 1 Protein homooligomer Homooligomer；Protein × 8 PDB declaration: octameric（8） Consistent with protein count
Chain A 91–310（220 aa） Fragment：NodD-EBD (Effector Binding Domain)
Chain B 91–310（220 aa） Fragment：NodD-EBD (Effector Binding Domain)
Chain C 91–310（220 aa） Fragment：NodD-EBD (Effector Binding Domain)
Chain D 91–310（220 aa） Fragment：NodD-EBD (Effector Binding Domain)
Chain E 91–310（220 aa） Fragment：NodD-EBD (Effector Binding Domain)
Chain F 91–310（220 aa） Fragment：NodD-EBD (Effector Binding Domain)
Chain G 91–310（220 aa） Fragment：NodD-EBD (Effector Binding Domain)
Chain H 91–310（220 aa） Fragment：NodD-EBD (Effector Binding Domain)
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；295 K；0.1 M HEPES pH 7.0, 0.1 M potassium chloride, 15% w/v polyethylene glycol 5,000 MME
Resolution 3.30 Å R-free 0.253

This page presents structural evidence recorded in PDB/mmCIF.“No recorded non-water small molecule” does not prove that the experimental sample was ligand-free; experimental conditions belong to the PDB experiment, while ligands and copy counts are shown for each biological assembly.