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Protein Structures and Oligomeric States

Enter a protein name, UniProt accession or PDB ID. Name searches ask you to confirm the protein identity before related structures are queried.

Current Protein Identity：F5H388 New Search
2PDB entries
5Biological assembly
13chain/assembly records
Main Difference Dimensions in This Set
Different construct Different mutation/modification Different assembly state Different experimental method Different experimental conditions Different structure-quality metrics

Difference tags compare only the current result set; every original PDB and assembly record remains separate.

Related-Structure Differences

Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.

PDB Entry Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Experimental Method Experimental Conditions Structure Quality
6NN6 Structure of Dot1L-H2BK120ub nucleosome complex Deposited 2019-01-14 Assembly 1 Protein–DNA Heteromer；Protein × 10 PDB declaration: dodecameric（12） Consistent with all polymers
Chain L 75–151（77 aa）
Mutation：G76S No recorded non-water small molecule ELECTRON MICROSCOPY
cryo-EM buffer pH 7.5
cryo-EM vitrification conditions Cryogen ETHANE
Resolution 3.90 Å
6UPU Crystal structure of the Orientia tsutsugamushi OtDUB in complex with three molecules of ubiquitin Deposited 2019-10-18 Assembly 1 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric（4） Consistent with protein count
Chain B 1–76（76 aa）
Chain C 1–76（76 aa）
Chain D 1–76（76 aa）
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions MICROBATCH；pH 7.5；298 K；150 mM potassium thiocyanate, 32.5% (w/v) PEG 3350
Resolution 2.20 Å R-free 0.209
6UPU Crystal structure of the Orientia tsutsugamushi OtDUB in complex with three molecules of ubiquitin Deposited 2019-10-18 Assembly 2 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric（4） Consistent with protein count
Chain F 1–76（76 aa）
Chain G 1–76（76 aa）
Chain H 1–76（76 aa）
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions MICROBATCH；pH 7.5；298 K；150 mM potassium thiocyanate, 32.5% (w/v) PEG 3350
Resolution 2.20 Å R-free 0.209
6UPU Crystal structure of the Orientia tsutsugamushi OtDUB in complex with three molecules of ubiquitin Deposited 2019-10-18 Assembly 3 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric（4） Consistent with protein count
Chain J 1–76（76 aa）
Chain K 1–76（76 aa）
Chain L 1–76（76 aa）
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions MICROBATCH；pH 7.5；298 K；150 mM potassium thiocyanate, 32.5% (w/v) PEG 3350
Resolution 2.20 Å R-free 0.209
6UPU Crystal structure of the Orientia tsutsugamushi OtDUB in complex with three molecules of ubiquitin Deposited 2019-10-18 Assembly 4 Protein heterocomplex Heteromer；Protein × 4 PDB declaration: tetrameric（4） Consistent with protein count
Chain N 1–76（76 aa）
Chain O 1–76（76 aa）
Chain P 1–76（76 aa）
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions MICROBATCH；pH 7.5；298 K；150 mM potassium thiocyanate, 32.5% (w/v) PEG 3350
Resolution 2.20 Å R-free 0.209

This page presents structural evidence recorded in PDB/mmCIF.“No recorded non-water small molecule” does not prove that the experimental sample was ligand-free; experimental conditions belong to the PDB experiment, while ligands and copy counts are shown for each biological assembly.