Current Protein Identity：O05209
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Difference tags compare only the current result set; every original PDB and assembly record remains separate.
Related-Structure Differences
Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.
| PDB Entry | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Experimental Method | Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 1CZ4 NMR STRUCTURE OF VAT-N: THE N-TERMINAL DOMAIN OF VAT (VCP-LIKE ATPASE OF THERMOPLASMA) Deposited 1999-09-01 | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain A
1–183（183 aa）
Fragment：N-TERMINAL DOMAIN: M1 TO E183 FOLLOWED BY A DIGLYCINE SPACER
|
Not recorded | No recorded non-water small molecule | SOLUTION NMR |
NMR measurement conditions
pH 5.9；320 K；Ionic strength (raw mmCIF value) 80 mM；Pressure AMBIENT
NMR measurement conditions
pH 5.9；320 K；Ionic strength (raw mmCIF value) 80 mM；Pressure AMBIENT
NMR sample composition
1.4 MM VAT-NU-15N,13C; 40 MM PHOSPHATE BUFFER NA; 90% H2O, 10% D2O
NMR sample composition
1.2 MM VAT-N U-15N; 40 MM PHOSPHATE BUFFER NA; 90% H2O, 10% D2O
|
Resolution not provided |
| 1CZ5 NMR STRUCTURE OF VAT-N: THE N-TERMINAL DOMAIN OF VAT (VCP-LIKE ATPASE OF THERMOPLASMA) Deposited 1999-09-01 | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain A
1–183（183 aa）
Fragment：N-TERMINAL DOMAIN: M1 TO E183 FOLLOWED BY A DIGLYCINE SPACER
|
Not recorded | No recorded non-water small molecule | SOLUTION NMR |
NMR measurement conditions
pH 5.9；320 K；Ionic strength (raw mmCIF value) 80 mM；Pressure AMBIENT
NMR measurement conditions
pH 5.9；320 K；Ionic strength (raw mmCIF value) 80 mM；Pressure AMBIENT
NMR sample composition
1.4 MM VAT-N U-15N,13C; 40 MM PHOSPHATE BUFFER NA; 90% H2O, 10% D2O
NMR sample composition
1.2 MM VAT-N U-15N; 40 MM PHOSPHATE BUFFER NA; 90% H2O, 10% D2O
|
Resolution not provided |
| 5G4F Structure of the ADP-bound VAT complex Deposited 2016-05-12 | Assembly 1 Protein homooligomer Homooligomer；Protein × 6 PDB declaration: hexameric（6） Consistent with protein count |
Chain A
1–726（726 aa）
Chain B
1–726（726 aa）
Chain C
1–726（726 aa）
Chain D
1–726（726 aa）
Chain E
1–726（726 aa）
Chain P
1–726（726 aa）
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
50 MM HEPES, 100 MM NACL, 5MM ADP；pH 7.5；50 MM HEPES, 100 MM NACL, 5MM ADP
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE；VITRIFICATION 1 -- CRYOGEN- ETHANE-PROPANE MIXTURE, HUMIDITY- 100, INSTRUMENT- FEI VITROBOT MARK III, METHOD- BLOT FOR 4 SECONDS BEFORE PLUNGING, DETAILS- SAMPLE HELD AT 4 DEGREES CELSIUS BEFORE FREEZING
|
Resolution 7.00 Å |
| 5G4G Structure of the ATPgS-bound VAT complex Deposited 2016-05-12 | Assembly 1 Protein homooligomer Homooligomer；Protein × 6 PDB declaration: hexameric（6） Consistent with protein count |
Chain A
6–726（721 aa）
Chain B
6–726（721 aa）
Chain C
6–726（721 aa）
Chain D
6–726（721 aa）
Chain E
6–726（721 aa）
Chain F
6–726（721 aa）
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
50 MM HEPES, 100 MM NACL, 5MM ATPGS；pH 7.5；50 MM HEPES, 100 MM NACL, 5MM ATPGS
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE；VITRIFICATION 1 -- CRYOGEN- ETHANE-PROPANE MIXTURE, HUMIDITY- 100, INSTRUMENT- FEI VITROBOT MARK III, METHOD- BLOT FOR 4 SECONDS BEFORE PLUNGING,
|
Resolution 7.80 Å |
| 5VC7 VCP like ATPase from T. acidophilum (VAT) - conformation 1 Deposited 2017-03-31 | Assembly 1 Protein homooligomer Homooligomer；Protein × 6 PDB declaration: hexameric（6） Consistent with protein count |
Chain A
183–745（563 aa）
Fragment：UNP residues 183-745
Chain C
183–745（563 aa）
Fragment：UNP residues 183-745
Chain D
183–745（563 aa）
Fragment：UNP residues 183-745
Chain E
183–745（563 aa）
Fragment：UNP residues 183-745
Chain F
183–745（563 aa）
Fragment：UNP residues 183-745
Chain G
183–745（563 aa）
Fragment：UNP residues 183-745
|
Not recorded | ATP ADENOSINE-5'-TRIPHOSPHATE × 12 | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE；Blot for 4 seconds before plunging
|
Resolution 3.90 Å |
| 5VCA VCP like ATPase from T. acidophilum (VAT)-Substrate bound conformation Deposited 2017-03-31 | Assembly 1 Protein homooligomer Homooligomer；Protein × 6 PDB declaration: hexameric（6） Consistent with protein count |
Chain M
183–745（563 aa）
Fragment：UNP residues 183-745
Chain N
183–745（563 aa）
Fragment：UNP residues 183-745
Chain O
183–745（563 aa）
Fragment：UNP residues 183-745
Chain P
183–745（563 aa）
Fragment：UNP residues 183-745
Chain Q
183–745（563 aa）
Fragment：UNP residues 183-745
Chain R
183–745（563 aa）
Fragment：UNP residues 183-745
|
Not recorded | No recorded non-water small molecule | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE；Blot for 4 seconds before plunging
|
Resolution 4.80 Å |
| 7DBO DPBB domain of VCP-like ATPase from Thermoplasma acidophilum Deposited 2020-10-21 | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain A
1–91（91 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 6 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100mM citrate / phosphate pH5.0, 1.4M Ammonium sulfate
|
Resolution 1.90 Å R-free 0.264 |
| 7DBO DPBB domain of VCP-like ATPase from Thermoplasma acidophilum Deposited 2020-10-21 | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain B
1–91（91 aa）
|
Non-standard monomer：Yes (specific site not provided by mmCIF) | SO4 SULFATE ION × 3 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；293 K；100mM citrate / phosphate pH5.0, 1.4M Ammonium sulfate
|
Resolution 1.90 Å R-free 0.264 |