Current Protein Identity:P39230
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Difference tags compare only the current result set; every original PDB and assembly record remains separate.
Related-Structure Differences
Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.
| PDB Entry | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Experimental Method | Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 6X6O Crystal structure of T4 protein Spackle as determined by native SAD phasing Deposited 2020-05-28 | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric(1) Consistent with protein count |
Chain A
1–97(97 aa)
|
Not recorded | CL CHLORIDE ION × 3 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;2.5 M ammonium sulfate, 0.05 M sodium acetate buffer, pH 4.5, and 4 % (v/v) glycerol
|
Resolution 1.52 Å R-free 0.191 |
| 6X6O Crystal structure of T4 protein Spackle as determined by native SAD phasing Deposited 2020-05-28 | Assembly 2 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric(1) Consistent with protein count |
Chain B
1–97(97 aa)
|
Not recorded | CL CHLORIDE ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;2.5 M ammonium sulfate, 0.05 M sodium acetate buffer, pH 4.5, and 4 % (v/v) glycerol
|
Resolution 1.52 Å R-free 0.191 |
| 6XC0 Crystal structure of bacteriophage T4 spackle and lysozyme in monoclinic form Deposited 2020-06-07 | Assembly 1 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric(2) Consistent with protein count |
Chain C
1–97(97 aa)
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 1 SIN SUCCINIC ACID × 1 CL CHLORIDE ION × 1 FMT FORMIC ACID × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;35% (w/v) polyethylene glycol 3350, 20% 2-propanol, 0.1 M HEPES-NaOH pH 7.5
|
Resolution 1.78 Å R-free 0.198 |
| 6XC0 Crystal structure of bacteriophage T4 spackle and lysozyme in monoclinic form Deposited 2020-06-07 | Assembly 2 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric(2) Consistent with protein count |
Chain D
1–97(97 aa)
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID × 2 CL CHLORIDE ION × 2 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;35% (w/v) polyethylene glycol 3350, 20% 2-propanol, 0.1 M HEPES-NaOH pH 7.5
|
Resolution 1.78 Å R-free 0.198 |
| 6XC1 Crystal structure of bacteriophage T4 spackle and lysozyme in orthorhombic form Deposited 2020-06-07 | Assembly 1 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric(2) Consistent with protein count |
Chain C
1–97(97 aa)
|
Not recorded | EDO 1,2-ETHANEDIOL × 2 IPA ISOPROPYL ALCOHOL × 3 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.5;293 K;35% (w/v) polyethylene glycol 3350, 20% 2-propanol, 0.1 M HEPES-NaOH pH 7.5
|
Resolution 1.92 Å R-free 0.215 |
| 7CN6 T4 phage spackle protein gp61.3 Deposited 2020-07-30 | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric(1) Consistent with protein count |
Chain A
23–97(75 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 9.4;293.15 K;PEG4000, glycine, calcium chloride
|
Resolution 1.60 Å R-free 0.228 |
| 7CN6 T4 phage spackle protein gp61.3 Deposited 2020-07-30 | Assembly 2 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric(1) Consistent with protein count |
Chain B
23–97(75 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 9.4;293.15 K;PEG4000, glycine, calcium chloride
|
Resolution 1.60 Å R-free 0.228 |
| 7CN6 T4 phage spackle protein gp61.3 Deposited 2020-07-30 | Assembly 3 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric(1) Consistent with protein count |
Chain C
23–97(75 aa)
|
Non-standard monomer:Yes (specific site not provided by mmCIF) | CA CALCIUM ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 9.4;293.15 K;PEG4000, glycine, calcium chloride
|
Resolution 1.60 Å R-free 0.228 |
| 7CN7 T4 phage spackle protein gp61.3 complex with lysozyme domain of gp5 tail lysozyme Deposited 2020-07-30 | Assembly 1 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric(2) Consistent with protein count |
Chain C
23–97(75 aa)
|
Not recorded | 1PG 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL × 1 EDO 1,2-ETHANEDIOL × 4 NA SODIUM ION × 3 CL CHLORIDE ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 6.4;293.15 K;PEG550MME, MES, KSCN
|
Resolution 1.15 Å R-free 0.121 |