Current Protein Identity:Q12476
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Difference tags compare only the current result set; every original PDB and assembly record remains separate.
Related-Structure Differences
Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.
| PDB Entry | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Experimental Method | Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 2LLI Low resolution structure of RNA-binding subunit of the TRAMP complex Deposited 2011-11-10 | Assembly 1 Protein monomer Monomer;Protein × 1 PDB declaration: monomeric(1) Consistent with protein count |
Chain A
57–180(124 aa)
Fragment:UNP residues 57-180
|
Not recorded | ZN ZINC ION × 5 | SOLUTION NMR |
NMR measurement conditions
pH 8;293 K;Ionic strength (raw mmCIF value) 0.5;Pressure ambient
NMR sample composition
100 uM uM [U-99% 13C; U-99% 15N] protein_1, 90% H2O/10% D2O | 90% H2O/10% D2O
|
Resolution not provided |
| 3NYB Structure and function of the polymerase core of TRAMP, a RNA surveillance complex Deposited 2010-07-14 | Assembly 1 Protein heterocomplex Heteromer;Protein × 2 PDB declaration: dimeric(2) Consistent with protein count |
Chain B
118–198(81 aa)
Fragment:fourth and fifth zinc knuckles of Air2p (UNP residues 118-198)
|
Not recorded | ZN ZINC ION × 2 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 5.8;277 K;100 mM sodium citrate at pH 5.8, 200 mM sodium acetate, 11% PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 277K
|
Resolution 2.70 Å R-free 0.258 |
| 4U4C The molecular architecture of the TRAMP complex reveals the organization and interplay of its two catalytic activities Deposited 2014-07-23 | Assembly 1 Insufficient information Heteromer;Protein × 2 PDB declaration: Dimeric(2) Consistent with protein count |
Chain B
1–62(62 aa)
Fragment:UNP residues 1-62,UNP residues 111-160,UNP residues 1-62,UNP residues 111-160
|
Not recorded | SO4 SULFATE ION × 7 EDO 1,2-ETHANEDIOL × 2 CL CHLORIDE ION × 2 PG4 TETRAETHYLENE GLYCOL × 2 PEG DI(HYDROXYETHYL)ETHER × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP;pH 8.2;285.15 K;0.1 M Tris pH 8.2,
0.15 M Li2SO4,
32% PEG 400
|
Resolution 2.40 Å R-free 0.240 |