Current Protein Identity：Q5NCY0
New Search
Difference tags compare only the current result set; every original PDB and assembly record remains separate.
Related-Structure Differences
Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.
| PDB Entry | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Experimental Method | Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 4EYU The free structure of the mouse C-terminal domain of KDM6B Deposited 2012-05-01 | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain A
1155–1293（139 aa）
Fragment：UNP residues 1155-1641
Chain A
1321–1641（321 aa）
Fragment：UNP residues 1155-1641
|
Not recorded | OGA N-OXALYLGLYCINE × 1 NI NICKEL (II) ION × 1 ZN ZINC ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
pH 8.2；298 K；11% methanol, 6% MPD, 5% PEG 4K, 5% GLYCEROL, HEPES pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.30 Å R-free 0.268 |
| 4EYU The free structure of the mouse C-terminal domain of KDM6B Deposited 2012-05-01 | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain B
1155–1293（139 aa）
Fragment：UNP residues 1155-1641
Chain B
1321–1641（321 aa）
Fragment：UNP residues 1155-1641
|
Not recorded | OGA N-OXALYLGLYCINE × 1 NI NICKEL (II) ION × 1 ZN ZINC ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
pH 8.2；298 K；11% methanol, 6% MPD, 5% PEG 4K, 5% GLYCEROL, HEPES pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
|
Resolution 2.30 Å R-free 0.268 |
| 4EZ4 free KDM6B structure Deposited 2012-05-02 | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain A
1155–1293（139 aa）
Fragment：UNP residues 1155-1641
Chain A
1321–1641（321 aa）
Fragment：UNP residues 1155-1641
|
Not recorded | OGA N-OXALYLGLYCINE × 1 NI NICKEL (II) ION × 1 ZN ZINC ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
pH 8.2；293 K；11% methanol, 6% MPD, 5% PEG 4K, 5% Glycerol, HEPES pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.99 Å R-free 0.250 |
| 4EZ4 free KDM6B structure Deposited 2012-05-02 | Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain B
1155–1293（139 aa）
Fragment：UNP residues 1155-1641
Chain B
1321–1641（321 aa）
Fragment：UNP residues 1155-1641
|
Not recorded | OGA N-OXALYLGLYCINE × 1 NI NICKEL (II) ION × 1 ZN ZINC ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
pH 8.2；293 K；11% methanol, 6% MPD, 5% PEG 4K, 5% Glycerol, HEPES pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.99 Å R-free 0.250 |
| 4EZH the crystal structure of KDM6B bound with H3K27me3 peptide Deposited 2012-05-02 | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count |
Chain A
1155–1293（139 aa）
Fragment：UNP residues 1155-1641
Chain A
1321–1641（321 aa）
Fragment：UNP residues 1155-1641
|
Not recorded | NI NICKEL (II) ION × 1 ZN ZINC ION × 1 OGA N-OXALYLGLYCINE × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
pH 8.2；293 K；11% methanol, 6% MPD, 5% PEG 4K, 5% Glycerol, HEPES 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.52 Å R-free 0.254 |
| 4EZH the crystal structure of KDM6B bound with H3K27me3 peptide Deposited 2012-05-02 | Assembly 2 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count |
Chain B
1155–1293（139 aa）
Fragment：UNP residues 1155-1641
Chain B
1321–1641（321 aa）
Fragment：UNP residues 1155-1641
|
Not recorded | NI NICKEL (II) ION × 1 ZN ZINC ION × 1 OGA N-OXALYLGLYCINE × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
pH 8.2；293 K；11% methanol, 6% MPD, 5% PEG 4K, 5% Glycerol, HEPES 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
|
Resolution 2.52 Å R-free 0.254 |
| 9NQU KDM6B-nucleosome structure stabilized by H3K27C-UNC8015 covalent conjugate Deposited 2025-03-13 | Assembly 1 Protein–DNA Heteromer；Protein × 9 PDB declaration: 11-meric（11） Consistent with all polymers |
Chain K
1130–1641（512 aa）
|
Not recorded | FE FE (III) ION × 1 ZN ZINC ION × 1 OH0 N-heptanoyl-N-hydroxy-beta-alanine × 1 | ELECTRON MICROSCOPY |
cryo-EM buffer
pH 7.5
cryo-EM vitrification conditions
Cryogen ETHANE-PROPANE
|
Resolution 3.16 Å |