Current Protein Identity：Q8N5J2
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Difference tags compare only the current result set; every original PDB and assembly record remains separate.
Related-Structure Differences
Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.
| PDB Entry | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Experimental Method | Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 5JKN Crystal structure of deubiquitinase MINDY-1 Deposited 2016-04-26 | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain A
110–384（275 aa）
|
Not recorded | PEG DI(HYDROXYETHYL)ETHER × 1 PO4 PHOSPHATE ION × 1 HG MERCURY (II) ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7.5；293.15 K；100mM Hepes-Na pH 7.5, 200mM NaCl and 25% PEG4000
|
Resolution 3.00 Å R-free 0.242 |
| 5JQS Crystal structure of deubiquitinase MINDY-1 in complex with Ubiquitin Deposited 2016-05-05 | Assembly 1 Protein heterocomplex Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count |
Chain A
110–384（275 aa）
|
Not recorded | AYE prop-2-en-1-amine × 1 SO4 SULFATE ION × 3 CL CHLORIDE ION × 1 DIO 1,4-DIETHYLENE DIOXIDE × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 6.5；293.15 K；100mM MES, 10% Dioxane and 1.6 M ammonium sulphate
|
Resolution 2.65 Å R-free 0.231 |
| 5MN9 Crystal structure of MINDY-1 tMIU in complex with K48-diUb Deposited 2016-12-13 | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric（3） Consistent with protein count |
Chain C
388–426（39 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 5.4；293.15 K；100 mM sodium acetate pH 5.4 and 18.5 % PEG3350
|
Resolution 2.05 Å R-free 0.223 |
| 6TUV Crystal structure of Mindy1 in complex with Lys48 linked di-ubiquitin Deposited 2020-01-08 | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric（3） Consistent with protein count |
Chain A
110–384（275 aa）
|
Not recorded | SO4 SULFATE ION × 1 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 8.5；293.15 K；100 mM Tris-HCl, 200mM LiSO4.H2O, 30% PEG400
|
Resolution 2.16 Å R-free 0.249 |
| 6TXB Crystal structure of Mindy1 mutant (P138A) in complex with Lys48 linked di-ubiquitin Deposited 2020-01-14 | Assembly 1 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric（3） Consistent with protein count |
Chain A
110–384（275 aa）
|
Mutation：C137A, P138A | NA SODIUM ION × 4 CL CHLORIDE ION × 2 | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293.15 K；0.2 M Sodium malonate, 20% PEG 3350
|
Resolution 2.18 Å R-free 0.246 |
| 6Y6R Crystal structure of MINDY1 T335D mutant Deposited 2020-02-27 | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain A
110–384（275 aa）
|
Mutation：T335D | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, SITTING DROP；pH 7.5；293.15 K；0.1 M HEPES sodium pH 7.5, 0.8 M Potassium sodium tartrate tetrahydrate
|
Resolution 3.32 Å R-free 0.243 |
| 6Z90 Crystal structure of MINDY1 mutant-P138A Deposited 2020-06-03 | Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count |
Chain A
110–384（275 aa）
|
Mutation：P138A | No recorded non-water small molecule | X-RAY DIFFRACTION |
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP；pH 7；293.15 K；0.7 M sodium citrate tribasic dihydrate, 0.1 M BIS-TRIS propane pH 7.0
|
Resolution 3.59 Å R-free 0.258 |