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Protein Structures and Oligomeric States

Enter a protein name, UniProt accession or PDB ID. Name searches ask you to confirm the protein identity before related structures are queried.

Current Protein Identity：Q8WZA1 New Search
10PDB entries
20Biological assembly
20chain/assembly records
Main Difference Dimensions in This Set
Different construct Different mutation/modification Different assembly state Different ligand/ion Different experimental conditions Different structure-quality metrics

Difference tags compare only the current result set; every original PDB and assembly record remains separate.

Related-Structure Differences

Each row represents one biological assembly in one PDB entry; multiple monomers of the same protein are listed separately.

PDB Entry Assembly / Oligomeric State Construct Mutations and Modifications Ligands, Ions and Non-polymers Experimental Method Experimental Conditions Structure Quality
5GGF Crystal structure of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase form II Deposited 2016-06-15 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 92–660（569 aa） Fragment：UNP residues 92-660
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6.5；277 K；1.4-1.6M Na malonate
Resolution 2.49 Å R-free 0.253
5GGF Crystal structure of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase form II Deposited 2016-06-15 Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain B 92–660（569 aa） Fragment：UNP residues 92-660
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6.5；277 K；1.4-1.6M Na malonate
Resolution 2.49 Å R-free 0.253
5GGF Crystal structure of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase form II Deposited 2016-06-15 Assembly 3 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain C 92–660（569 aa） Fragment：UNP residues 92-660
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6.5；277 K；1.4-1.6M Na malonate
Resolution 2.49 Å R-free 0.253
5GGG Crystal structure of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase form I Deposited 2016-06-16 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 92–660（569 aa） Fragment：UNP residues 92-660
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6.5；277 K；Na malonate
Resolution 3.00 Å R-free 0.241
5GGI Crystal structure of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with Mn, UDP and Mannosyl-peptide Deposited 2016-06-16 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 92–660（569 aa） Fragment：UNP residues 92-660
Not recorded UDP URIDINE-5'-DIPHOSPHATE × 1 MN MANGANESE (II) ION × 1 PO4 PHOSPHATE ION × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；293 K；NaKPO4
Resolution 2.60 Å R-free 0.238
5GGI Crystal structure of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with Mn, UDP and Mannosyl-peptide Deposited 2016-06-16 Assembly 2 Protein heterocomplex Heteromer；Protein × 3 PDB declaration: trimeric（3） Consistent with protein count
Chain B 92–660（569 aa） Fragment：UNP residues 92-660
Not recorded UDP URIDINE-5'-DIPHOSPHATE × 1 MN MANGANESE (II) ION × 1 MAN alpha-D-mannopyranose × 2 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；293 K；NaKPO4
Resolution 2.60 Å R-free 0.238
5GGJ Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with Man-alpha-pNP Deposited 2016-06-16 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 92–250（159 aa） Fragment：UNP residues 92-250
Not recorded PNA 4-nitrophenyl alpha-D-mannopyranoside × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 8.8；293 K；Tris-HCl, PEG-6000
Resolution 1.42 Å R-free 0.209
5GGJ Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with Man-alpha-pNP Deposited 2016-06-16 Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain B 92–250（159 aa） Fragment：UNP residues 92-250
Not recorded PNA 4-nitrophenyl alpha-D-mannopyranoside × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 8.8；293 K；Tris-HCl, PEG-6000
Resolution 1.42 Å R-free 0.209
5GGK Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with Man-beta-pNP Deposited 2016-06-16 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 92–250（159 aa） Fragment：UNP residues 92-250
Not recorded MBE 4-nitrophenyl beta-D-mannopyranoside × 1 GOL GLYCEROL × 2 EDO 1,2-ETHANEDIOL × 2 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；Tris-HCl, PEG-10000
Resolution 1.30 Å R-free 0.175
5GGK Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with Man-beta-pNP Deposited 2016-06-16 Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain B 92–250（159 aa） Fragment：UNP residues 92-250
Not recorded MBE 4-nitrophenyl beta-D-mannopyranoside × 1 GOL GLYCEROL × 1 PEG DI(HYDROXYETHYL)ETHER × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 8.5；293 K；Tris-HCl, PEG-10000
Resolution 1.30 Å R-free 0.175
5GGL Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GlcNAc-alpha-pNP Deposited 2016-06-16 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 92–250（159 aa） Fragment：UNP residues 92-250
Not recorded 6ZC 4-nitrophenyl 2-acetamido-2-deoxy-alpha-D-glucopyranoside × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 8.8；293 K；Tris-HCl, PEG-8000
Resolution 1.27 Å R-free 0.161
5GGL Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GlcNAc-alpha-pNP Deposited 2016-06-16 Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain B 92–250（159 aa） Fragment：UNP residues 92-250
Not recorded 6ZC 4-nitrophenyl 2-acetamido-2-deoxy-alpha-D-glucopyranoside × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 8.8；293 K；Tris-HCl, PEG-8000
Resolution 1.27 Å R-free 0.161
5GGN Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GlcNAc-beta-pNP Deposited 2016-06-16 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 92–250（159 aa） Fragment：UNP residues 92-250
Not recorded LEC 4-nitrophenyl 2-acetamido-2-deoxy-beta-D-glucopyranoside × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 8.8；293 K；Tris-HCl, PEG-6000
Resolution 1.21 Å R-free 0.166
5GGN Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GlcNAc-beta-pNP Deposited 2016-06-16 Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain B 92–250（159 aa） Fragment：UNP residues 92-250
Not recorded LEC 4-nitrophenyl 2-acetamido-2-deoxy-beta-D-glucopyranoside × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 8.8；293 K；Tris-HCl, PEG-6000
Resolution 1.21 Å R-free 0.166
5GGO Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GalNac-beta1,3-GlcNAc-beta-pNP Deposited 2016-06-16 Assembly 1 Other combination Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 92–250（159 aa） Fragment：UNP residues 97-250
Not recorded No recorded non-water small molecule X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 8.8；293 K；Tris-HCl, PEG-6000
Resolution 1.50 Å R-free 0.208
5GGO Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GalNac-beta1,3-GlcNAc-beta-pNP Deposited 2016-06-16 Assembly 2 Other combination Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain B 92–250（159 aa） Fragment：UNP residues 97-250
Not recorded EDO 1,2-ETHANEDIOL × 1 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 8.8；293 K；Tris-HCl, PEG-6000
Resolution 1.50 Å R-free 0.208
5GGP Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GlcNAc-beta1,2-Man-peptide Deposited 2016-06-16 Assembly 1 Other combination Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count
Chain A 92–250（159 aa） Fragment：UNP residues 92-250
Not recorded NA SODIUM ION × 2 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6；293 K；MES-NaOH, LiCl2, Na acetate, PEG-6000
Resolution 1.60 Å R-free 0.246
5GGP Crystal structure of N-terminal domain of human protein O-mannose beta-1,2-N-acetylglucosaminyltransferase in complex with GlcNAc-beta1,2-Man-peptide Deposited 2016-06-16 Assembly 2 Other combination Heteromer；Protein × 2 PDB declaration: dimeric（2） Consistent with protein count
Chain B 92–250（159 aa） Fragment：UNP residues 92-250
Not recorded NA SODIUM ION × 3 X-RAY DIFFRACTION
X-ray crystallization conditions VAPOR DIFFUSION, HANGING DROP；pH 6；293 K；MES-NaOH, LiCl2, Na acetate, PEG-6000
Resolution 1.60 Å R-free 0.246
5XFC Serial femtosecond X-ray structure of a stem domain of human O-mannose beta-1,2-N-acetylglucosaminyltransferase solved by Se-SAD using XFEL (refined against 13,000 patterns) Deposited 2017-04-10 Assembly 1 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain A 92–250（159 aa） Fragment：UNP residues 92-250
Non-standard monomer：Yes (specific site not provided by mmCIF) MBE 4-nitrophenyl beta-D-mannopyranoside × 1 X-RAY DIFFRACTION
X-ray crystallization conditions BATCH MODE；pH 7；293 K；HEPES-NaOH, PEG4000
Resolution 1.40 Å R-free 0.207
5XFC Serial femtosecond X-ray structure of a stem domain of human O-mannose beta-1,2-N-acetylglucosaminyltransferase solved by Se-SAD using XFEL (refined against 13,000 patterns) Deposited 2017-04-10 Assembly 2 Protein monomer Monomer；Protein × 1 PDB declaration: monomeric（1） Consistent with protein count
Chain B 92–250（159 aa） Fragment：UNP residues 92-250
Non-standard monomer：Yes (specific site not provided by mmCIF) MBE 4-nitrophenyl beta-D-mannopyranoside × 1 X-RAY DIFFRACTION
X-ray crystallization conditions BATCH MODE；pH 7；293 K；HEPES-NaOH, PEG4000
Resolution 1.40 Å R-free 0.207

This page presents structural evidence recorded in PDB/mmCIF.“No recorded non-water small molecule” does not prove that the experimental sample was ligand-free; experimental conditions belong to the PDB experiment, while ligands and copy counts are shown for each biological assembly.