SASDA38

transglutaminase-2 (TGA2)

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2023-06-21T07:56:39.492710+02:00

Structural basis for antigen recognition by transglutaminase 2-specific autoantibodies in celiac disease --- this is the scattering profile of TG2 by itself that is comprised primarilly of monomers and higher oligomeric species (monomer 92%; dimer 8% volume fraction.)

1. 样品、组分与实验条件 Sample & Experiment

样品 1 · transglutaminase-2 (TGA2)

浓度— – 5.5 mg/ml缓冲液 / pH20 mM Tris 150mM NaCl 1mM EDTA / 7.2
实验温度10.0 设备 / 束线PETRA III / EMBL P12
波长0.12 nm曝光0.05 s × 20

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
transglutaminase 2
查看序列
MGSSHHHHHHSSGLVPRGSHMAEELVLERCDLELETNGRDHHTADLCREKLVVRRGQPFWLTLHFEGRNYEASVDSLTFSVVTGPAPSQEAGTKARFPLRDAVEEGDWTATVVDQQDCTLSLQLTTPANAPIGLYRLSLEASTGYQGSSFVLGHFILLFNAWCPADAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQFEDGILDICLILLDVNPKFLKNAGRDCSRRSSPVYVGRVVSGMVNCNDDQGVLLGRWDNNYGDGVSPMSWIGSVDILRRWKNHGCQRVKYGQCWVFAAVACTVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGEIQGDKSEMIWNFHCWVESWMTRPDLQPGYEGWQALDPTPQEKSEGTYCCGPVPVRAIKEGDLSTKYDAPFVFAEVNADVVDWIQQDDGSVHKSINRSLIVGLKISTKSVGRDEREDITHTYKYPEGSSEEREAFTRANHLNKLAEKEETGMAMRIRVGQSMNMGSDFDVFAHITNNTAEEYVCRLLLCARTVSYNGILGPECGTKYLLNLNLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALLVEPVINSYLLAERDLYLENPEIKIRILGEPKQKRKLVAEVSLQNPLPVALEGCTFTVEGAGLTEEQKTVEIPDPVEAGEEVKVRMDLLPLHMGLHKLVVNFESDKLKAVKGFRNVIIGPA
proteinHomo sapiens—–—monomer分子数 179.491 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
11705[3]0.0199359–4.50939 1/nm含误差列缺失 057sasbdb/entries/38/sasda38/source/SASDA38.dat

2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)12.00.5nm
i0Guinier1922.08.0
i0P(r)1913.015.3
mwExperimental77.0kDa
mwGuinier I(0)77.0kDa
mwPorod73.0kDa
porod_volumePorod117.0nm³
rgGuinier3.380.02nm
rgP(r)3.430.02nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

3. 来源拟合与模型 Source Fits & Models

4. 来源文件索引 Source Files

5. 实验说明与论文 Experiment & Publication

6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称20 mM Tris 150mM NaCl 1mM EDTA缓冲液浓度20.0 mM
pH7.2添加剂150mM NaCl, 1mM EDTA
缓冲液说明
纯度测定方法消光系数
吸收值散射对比度
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2015-01-17储存 / 测量温度10.0 / 10.0
曝光时间0.05帧数20
波长0.12样品-探测器距离3.1
光源X-ray synchrotron探测器Pilatus 2M
机构 / 束线PETRA III / EMBL P12 · DESY; Hamburg, Germany
q 范围0.02 – 4.509样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
curvesasbdb/entries/38/sasda38/source/SASDA38.datdownloaded7712600da6b0814d96cab967f7958b9daa8754c76e59c3bad06753653950541e2cc80下载查看原文件源站
full_entry_zipsasbdb/entries/38/sasda38/source/SASDA38.zipdownloaded194229eb12a8a4e7a9058daf0126e96b5ab5a23bb19fdbe5710d43d103a7c7cefb336b下载查看原文件源站
pddfsasbdb/entries/38/sasda38/source/SASDA38.outdownloaded9873439838437060c6c965e08b35989786c2189b5b8603076d4a1721c72be8c8b5d82下载查看原文件源站
sascifsasbdb/entries/38/sasda38/source/SASDA38.sascifdownloaded841414cba3bf911b88a42a3298183ce21641bf9843fc8ffe7272d9730bd5d778e685f3下载查看原文件源站
summarysasbdb/entries/38/sasda38/source/summary.jsondownloaded783628d194cc977fb2c63807f8c5be3a487327228ed36adf8ee6bd51852f172135f6下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(5 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:167 个字段值
字段路径原始值
codeSASDA38
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleStructural Basis for Antigen Recognition by Transglutaminase 2-specific Autoantibodies in Celiac Disease.
project.publication.titleStructural Basis for Antigen Recognition by Transglutaminase 2-specific Autoantibodies in Celiac Disease.
project.publication.author_listChen X, Hnida K, Graewert MA, Andersen JT, Iversen R, Tuukkanen A, Svergun D, Sollid LM
project.publication.journalJ Biol Chem
project.publication.doi10.1074/jbc.M115.669895
project.publication.pmid26160175
project.publication.published_date2015 Aug 28
project.statusreleased
project.submitted_date2015-04-14
project.released_date2015-08-28
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experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus 2M
experiment.instrument.detector.resolutionnull
experiment.instrument.namePETRA III
experiment.instrument.cityDESY; Hamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL P12
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nametransglutaminase 2
experiment.sample.molecule[0].short_nameTGA
experiment.sample.molecule[0].sequenceMGSSHHHHHHSSGLVPRGSH maeelvlerc dleletngrd hhtadlcrek lvvrrgqpfw ltlhfegrny easvdsltfs vvtgpapsqe agtkarfplr daveegdwta tvvdqqdctl slqlttpana piglyrlsle astgyqgssf vlghfillfn awcpadavyl dseeerqeyv ltqqgfiyqg sakfiknipw nfgqfedgil diclilldvn pkflknagrd csrrsspvyv grvvsgmvnc nddqgvllgr wdnnygdgvs pmswigsvdi lrrwknhgcq rvkygqcwvf aavactvlrc lgiptrvvtn ynsahdqnsn llieyfrnef geiqgdksem iwnfhcwves wmtrpdlqpg yegwqaldpt pqeksegtyc cgpvpvraik egdlstkyda pfvfaevnad vvdwiqqddg svhksinrsl ivglkistks vgrderedit htykypegss eereaftran hlnkl aekee tgmamrirvg qsmnmgsdfd vfahitnnta eeyvcrlllc artvsyngil gpecgtkyll nlnlepfsek svplcilyek yrdcltesnl ikvrallvep vinsyllaer dlylenpeik irilgepkqk rklvaevslq nplpvalegc tftvegaglt eeqktveipd pveageevkv rmdllplhmg lhklvvnfes dklkavkgfr nviigpa
experiment.sample.molecule[0].organismHomo sapiens
experiment.sample.molecule[0].uniprot_codenull
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequencenull
experiment.sample.molecule[0].mw79.491
experiment.sample.molecule[0].total_mw79.491
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name20 mM Tris 150mM NaCl 1mM EDTA
experiment.sample.buffer.concentration_unitmM
experiment.sample.buffer.commentnull
experiment.sample.buffer.additive150mM NaCl, 1mM EDTA
experiment.sample.buffer.concentration20.0
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.2
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nametransglutaminase-2 (TGA2)
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameEMBL-Hamburg
experiment.contributor[0].affiliation[0].addressNotkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany
experiment.contributor[0].affiliation[0].full_nameEuropean Molecular Biology Laboratory (EMBL) - Hamburg outstation
experiment.contributor[0].affiliation[0].webpagehttp://www.embl-hamburg.de/index.php
experiment.contributor[0].contributor_nameMelissa
experiment.contributor[0].contributor_surnameGraewert
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitmg/ml
experiment.date2015-01-17
experiment.storage_temperature10.0
experiment.cell_temperature10.0
experiment.exposure_time0.05
experiment.number_of_frames20
experiment.wavelength0.12
experiment.sample_detector_distance3.1
experiment.concentration_minnull
experiment.concentration_max5.5
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.02
experiment.s_max4.509
experiment.total_exposure_time1.0
experiment.seccolumnnull
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fits[0].models[0].softwareCRYSOL
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modelatomic
fits[0].models[0].software_version
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fits[0].models[0].bead_radius1.9
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fits[0].models[0].comment
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fits[1].p_value0.0001
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fits[1].fit_lognull
fits[1].software_versionnull
fits[1].descriptionnull
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionGNOM
i0_calibration_standardnull
descriptionStructural basis for antigen recognition by transglutaminase 2-specific autoantibodies in celiac disease --- this is the scattering profile of TG2 by itself that is comprised primarilly of monomers and higher oligomeric species (monomer 92%; dimer 8% volume fraction.)
experiment_descriptionnull
tags[]
intensity_unitnull
experimental_mw77.0
experimental_mw_errornull
guinier_i0_mw77.0
guinier_i0_mw_errornull
porod_mw73.0
porod_mw_errornull
pddf_i01913.0
pddf_i0_error15.3
guinier_i01922.0
guinier_i0_error8.0
pddf_rg3.43
pddf_rg_error0.02
guinier_rg3.38
guinier_rg_error0.02
pddf_dmax12.0
pddf_dmax_error0.5
porod_volume117.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first32
guinier_point_last139
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDA38_datloglog_img.png
symmetrynull
last_modified2023-06-21T07:56:39.492710+02:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDA38
statussuccess
started_at2026-08-11T15:44:36.689077+00:00
finished_at2026-08-11T15:44:51.663331+00:00
source_last_modified2023-06-21T07:56:39.492710+02:00
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查看完整 summary.json 原文
{
  "code": "SASDA38",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "Structural Basis for Antigen Recognition by Transglutaminase 2-specific Autoantibodies in Celiac Disease.",
    "publication": {
      "title": "Structural Basis for Antigen Recognition by Transglutaminase 2-specific Autoantibodies in Celiac Disease.",
      "author_list": "Chen X, Hnida K, Graewert MA, Andersen JT, Iversen R, Tuukkanen A, Svergun D, Sollid LM",
      "journal": "J Biol Chem",
      "doi": "10.1074/jbc.M115.669895",
      "pmid": "26160175",
      "published_date": "2015 Aug 28"
    },
    "status": "released",
    "submitted_date": "2015-04-14",
    "released_date": "2015-08-28"
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    "sample": {
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查看完整 manifest.json 原文
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