The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.
Every source field is expanded here, including empty values, list members and fields already shown above.
View the complete summary.json source
{
"code": "SASDA46",
"status": "Published",
"type_of_curve": "Merged",
"angular_unit": "1/nm",
"project": {
"title": "Molecular basis of histone tail recognition by human TIP5 PHD finger and bromodomain of the chromatin remodeling complex NoRC.",
"publication": {
"title": "Molecular basis of histone tail recognition by human TIP5 PHD finger and bromodomain of the chromatin remodeling complex NoRC.",
"author_list": "Tallant C, Valentini E, Fedorov O, Overvoorde L, Ferguson FM, Filippakopoulos P, Svergun DI, Knapp S, Ciulli A",
"journal": "Structure",
"doi": "10.1016/j.str.2014.10.017",
"pmid": "25533489",
"published_date": "2015 Jan 6"
},
"status": "released",
"submitted_date": null,
"released_date": "2015-07-07"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDA46.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDA46.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA46_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA46_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDA46_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA46_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDA46.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus 2M",
"resolution": null
},
"name": "PETRA III",
"city": "DESY; Hamburg",
"country": "Germany",
"beamline_name": "EMBL P12",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Bromodomain adjacent to zinc finger domain protein 2A",
"short_name": "TIP5",
"sequence": "HMSVNKVTCLVCRKGDNDEFLLLCDGCDRGCHIYCHRPKMEAVPEGDWFCTVCLAQQVEGEFTQKPGFPKRGQKRKSGYSLNFSEGDGRRRRVLLRGRESPAAGPRYSEEGLSPSKRRRLSMRNHHSDLTFCEIILMEMESHDAAWPFLEPVN\r\nPRLVSGYRRIIKNPMDFSTMRERLLRGGYTSSEEFAADALLVFDNCQTFNEDDSEVGKAGHIMRRFFESRWEEFYQGK\r\n",
"organism": "Homo sapiens",
"uniprot_code": null,
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": null,
"mw": 26.7,
"total_mw": 26.7,
"number_molecules": 1,
"complex_state": null,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "20 mM Tris 500 mM NaCl 2 mM DTT 10 microM ZnCl2",
"concentration_unit": "mM",
"comment": null,
"additive": "NaCl 500.000 mM, DTT 2.000 mM, ZnCl2 10.000 microM",
"concentration": 20.0,
"pka": null,
"ph": 8.0,
"deuteration": null
},
"purity_method": null,
"name": "TIP5 in Tris",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "EMBL-Hamburg",
"address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
"full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
"webpage": "http://www.embl-hamburg.de/index.php"
}
],
"contributor_name": "Erica",
"contributor_surname": "Valentini",
"orcid": null
}
],
"concentration_method": "nanodrop",
"concentration_unit": "mg/ml",
"date": "2013-03-16",
"storage_temperature": 10.0,
"cell_temperature": 10.0,
"exposure_time": 0.05,
"number_of_frames": 20,
"wavelength": 0.12,
"sample_detector_distance": 3.1,
"concentration_min": 3.18,
"concentration_max": 7.16,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.139,
"s_max": 4.652,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDA46_fit1_model1_img.png",
"software": "BUNCH",
"pdb_link": [],
"model_title": null,
"type_of_model": "mix",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDA46_fit1_model1.pdb",
"model_mw": 26.16,
"bead_radius": 1.9,
"log": null,
"symmetry": "",
"comment": "",
"user": 1
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDA46_fit1_fit_img.png",
"software": null,
"chi_square_value": 1.3225,
"p_value": 0.0,
"fit_residual_plot": "SASDA46_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDA46_fit1.fit",
"fit_log": null,
"software_version": null,
"description": null
},
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDA46_fit2_model1_img.png",
"software": "DAMMIF",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDA46_fit2_model1.pdb",
"model_mw": 31.089,
"bead_radius": 2.5,
"log": null,
"symmetry": "",
"comment": "",
"user": 1
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDA46_fit2_fit_img.png",
"software": null,
"chi_square_value": 1.202592,
"p_value": 0.026995,
"fit_residual_plot": "SASDA46_fit2_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDA46_fit2.fir",
"fit_log": null,
"software_version": null,
"description": null
},
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDA46_fit3_model1_img.png",
"software": "EOM/RANCH",
"pdb_link": [],
"model_title": null,
"type_of_model": "mix",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDA46_fit3_model1.pdb",
"model_mw": 26.16,
"bead_radius": 1.9,
"log": null,
"symmetry": "",
"comment": "",
"user": 1
},
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDA46_fit3_model2_img.png",
"software": "EOM/RANCH",
"pdb_link": [],
"model_title": null,
"type_of_model": "mix",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDA46_fit3_model2.pdb",
"model_mw": 26.16,
"bead_radius": 1.9,
"log": null,
"symmetry": "",
"comment": "",
"user": 1
},
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDA46_fit3_model3_img.png",
"software": "EOM/RANCH",
"pdb_link": [],
"model_title": null,
"type_of_model": "mix",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDA46_fit3_model3.pdb",
"model_mw": 26.16,
"bead_radius": 1.9,
"log": null,
"symmetry": "",
"comment": "",
"user": 1
},
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDA46_fit3_model4_img.png",
"software": "EOM/RANCH",
"pdb_link": [],
"model_title": null,
"type_of_model": "mix",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDA46_fit3_model4.pdb",
"model_mw": 26.16,
"bead_radius": 1.9,
"log": null,
"symmetry": "",
"comment": "",
"user": 1
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDA46_fit3_fit_img.png",
"software": null,
"chi_square_value": 1.206382,
"p_value": 0.0002,
"fit_residual_plot": "fit4columns137_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDA46_fit3.fit",
"fit_log": null,
"software_version": null,
"description": null
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": null,
"i0_calibration_standard": "BSA",
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": null,
"experimental_mw": 28.0,
"experimental_mw_error": null,
"guinier_i0_mw": 28.0,
"guinier_i0_mw_error": null,
"porod_mw": 26.0,
"porod_mw_error": null,
"pddf_i0": 1800.0,
"pddf_i0_error": null,
"guinier_i0": 1800.0,
"guinier_i0_error": null,
"pddf_rg": 3.1,
"pddf_rg_error": null,
"guinier_rg": 3.0,
"guinier_rg_error": null,
"pddf_dmax": 10.0,
"pddf_dmax_error": null,
"porod_volume": 45.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 37,
"guinier_point_last": 114,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDA46_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-06-21T07:56:39.492710+02:00",
"bragg_peak": []
}
