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{
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"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "Molecular basis of histone tail recognition by human TIP5 PHD finger and bromodomain of the chromatin remodeling complex NoRC.",
"publication": {
"title": "Molecular basis of histone tail recognition by human TIP5 PHD finger and bromodomain of the chromatin remodeling complex NoRC.",
"author_list": "Tallant C, Valentini E, Fedorov O, Overvoorde L, Ferguson FM, Filippakopoulos P, Svergun DI, Knapp S, Ciulli A",
"journal": "Structure",
"doi": "10.1016/j.str.2014.10.017",
"pmid": "25533489",
"published_date": "2015 Jan 6"
},
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"released_date": "2015-07-07"
},
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"affiliation": [
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"address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
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"last_modified": "2023-05-25T11:21:52.654103+02:00",
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