SASDA62

bAmylase in PBS

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Merged 最后更新:2023-05-25T11:21:52.654103+02:00

1. 样品、组分与实验条件 Sample & Experiment

样品 1 · bAmylase in PBS

浓度0.37 – 12.47 mg/ml缓冲液 / pHPBS / 7.4
实验温度10.0 设备 / 束线DORIS III, DESY / EMBL X33
波长0.15 nm曝光15.0 s × 8

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Beta-amylase
查看序列
>SP|P10537|AMYB_IPOBABETA-AMYLASEOS=IPOMOEABATATASGN=BMY1PE=1SV=4MAPIPGVMPIGNYVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGAAGELRYPSYPETQGWVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPGKGAGTYNDTPDKTEFFRPNGTYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNVRPNGVNLNGPPKLKMSGLTYLRLSDDLLQTDNFELFKKFVKKMHADLDPSPNAISPAVLERSNSAITIDELMEATKGSRPFPWYDVTDMPVDGSNPFD
proteinIpomoea batatasP10537—–—tetramer分子数 456.08 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
12168[3]0.0871252–6.01453 1/nm含误差列缺失 02sasbdb/entries/62/sasda62/source/SASDA62.dat

2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)12.7nm
i0Guinier164.38
i0P(r)155.7
mwExperimental162.0kDa
mwGuinier I(0)162.0kDa
porod_volumePorod214.0nm³
rgGuinier4.21nm
rgP(r)4.1nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

3. 来源拟合与模型 Source Fits & Models

4. 来源文件索引 Source Files

5. 实验说明与论文 Experiment & Publication

6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称PBS缓冲液浓度
pH7.4添加剂
缓冲液说明
纯度测定方法gel filtration消光系数17.68
吸收值散射对比度
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2012-09-20储存 / 测量温度10.0 / 10.0
曝光时间15.0帧数8
波长0.15样品-探测器距离2.7
光源X-ray synchrotron探测器Pilatus 1M-W
机构 / 束线DORIS III, DESY / EMBL X33 · Hamburg, Germany
q 范围0.087 – 6.015样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
curvesasbdb/entries/62/sasda62/source/SASDA62.datdownloaded97880af53363cd71854209f299459bb920573552584c6642e41052b37cdb358567b23下载查看原文件源站
full_entry_zipsasbdb/entries/62/sasda62/source/SASDA62.zipdownloaded4209288c3c6d8a94ab1232f68d94380ba06af9d2007e52c785a08a45594401337878f8下载查看原文件源站
pddfsasbdb/entries/62/sasda62/source/SASDA62.outdownloaded71036becdbff8113a3bf8cbecef4b73676a045c550716d4f3d28a9e1faed5fb049b2e下载查看原文件源站
sascifsasbdb/entries/62/sasda62/source/SASDA62.sascifdownloaded207728520f960edc0c1d54a724dcb0664a4f73e5432304b10bdf29dddce4ce1758fdfac下载查看原文件源站
summarysasbdb/entries/62/sasda62/source/summary.jsondownloaded832372fb140abd26abbb247fc2ef9a7d3f645c30ec7b0c1a4539d638d6a7aea97e7a下载查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(6 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:177 个字段值
字段路径原始值
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statusPublished
type_of_curveMerged
angular_unit1/nm
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project.publicationnull
project.statusreleased
project.submitted_datenull
project.released_date2015-07-07
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experiment.instrument.detector.namePilatus 1M-W
experiment.instrument.detector.resolution0.172
experiment.instrument.nameDORIS III, DESY
experiment.instrument.cityHamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL X33
experiment.instrument.beam_geometry0.60
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameBeta-amylase
experiment.sample.molecule[0].short_namenull
experiment.sample.molecule[0].sequence>sp|P10537|AMYB_IPOBA Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4 MAPIPGVMPIGNYVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGI IEAKGPKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKN PDIFYTNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIE VGCGAAGELRYPSYPETQGWVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPGKGAGT YNDTPDKTEFFRPNGTYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVS GIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKS APQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNVRPNGVNLNGPPKLKMSGLT YLRLSDDLLQTDNFELFKKFVKKMHADLDPSPNAISPAVLERSNSAITIDELMEATKGSR PFPWYDVTDMPVDGSNPFD
experiment.sample.molecule[0].organismIpomoea batatas
experiment.sample.molecule[0].uniprot_codeP10537
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationtetramer
experiment.sample.molecule[0].molecular_typeprotein
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experiment.sample.molecule[0].mw56.08
experiment.sample.molecule[0].total_mw224.4
experiment.sample.molecule[0].number_molecules4
experiment.sample.molecule[0].complex_statenull
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
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experiment.sample.buffer.namePBS
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experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pka7.0
experiment.sample.buffer.ph7.4
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodgel filtration
experiment.sample.namebAmylase in PBS
experiment.sample.ext_coefficient17.68
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
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experiment.contributor[0].affiliation[0].addressNotkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany
experiment.contributor[0].affiliation[0].full_nameEuropean Molecular Biology Laboratory (EMBL) - Hamburg outstation
experiment.contributor[0].affiliation[0].webpagehttp://www.embl-hamburg.de/index.php
experiment.contributor[0].contributor_nameDarja
experiment.contributor[0].contributor_surnameRuskule
experiment.contributor[0].orcidnull
experiment.concentration_methodnanodrop
experiment.concentration_unitmg/ml
experiment.date2012-09-20
experiment.storage_temperature10.0
experiment.cell_temperature10.0
experiment.exposure_time15.0
experiment.number_of_frames8
experiment.wavelength0.15
experiment.sample_detector_distance2.7
experiment.concentration_min0.37
experiment.concentration_max12.47
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.087
experiment.s_max6.015
experiment.total_exposure_timenull
experiment.seccolumnnull
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fits[0].p_value0.0
fits[0].fit_residual_plotSASDA62_fit1_fitresiduals_img.png
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fits[0].descriptionnull
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fits[1].models[0].pdb_link[0].pdb_code1fa2
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fits[1].softwarenull
fits[1].chi_square_value22.8016
fits[1].p_value0.0
fits[1].fit_residual_plotSASDA62_fit2_fitresiduals_img.png
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fits[1].fit_lognull
fits[1].software_versionnull
fits[1].descriptionnull
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionGNOM
i0_calibration_standardBSA
descriptionnull
experiment_descriptionnull
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intensities_log_log_plotSASDA62_datloglog_img.png
symmetrynull
last_modified2023-05-25T11:21:52.654103+02:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDA62
statussuccess
started_at2026-08-11T13:31:10.411947+00:00
finished_at2026-08-11T13:31:22.531634+00:00
source_last_modified2023-05-25T11:21:52.654103+02:00
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查看完整 summary.json 原文
{
  "code": "SASDA62",
  "status": "Published",
  "type_of_curve": "Merged",
  "angular_unit": "1/nm",
  "project": {
    "title": "Standard proteins",
    "publication": null,
    "status": "released",
    "submitted_date": null,
    "released_date": "2015-07-07"
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            "address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
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}
查看完整 manifest.json 原文
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