The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.
Every source field is expanded here, including empty values, list members and fields already shown above.
View the complete summary.json source
{
"code": "SASDA77",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "Cooperative folding of intrinsically disordered domains drives assembly of a strong elongated protein.",
"publication": {
"title": "Cooperative folding of intrinsically disordered domains drives assembly of a strong elongated protein.",
"author_list": "Gruszka DT, Whelan F, Farrance OE, Fung HK, Paci E, Jeffries CM, Svergun DI, Baldock C, Baumann CG, Brockwell DJ, Potts JR, Clarke J",
"journal": "Nat Commun",
"doi": "10.1038/ncomms8271",
"pmid": "26027519",
"published_date": "2015 Jun 1"
},
"status": "released",
"submitted_date": "2014-11-27",
"released_date": "2015-07-07"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDA77.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDA77.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA77_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA77_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDA77_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA77_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDA77.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus 2M",
"resolution": null
},
"name": "PETRA III",
"city": "DESY; Hamburg",
"country": "Germany",
"beamline_name": "EMBL P12",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Surface protein G",
"short_name": "SasG",
"sequence": "GPAMAPKTITELEK KVEEIPFKKE RKFNPDLAPG TEKVTREGQK GEKTITTPTL KNPLTGVIIS KGEPKEEITK DPINELTEYG PETIAPGHRD EFDPKLPTGE KEEVPGKPGI KNPETGDVVR PPVDSVTKYG PVKGDSIVEK EEIPFEKERK FNPDLAPGTE KVTREGQKGE KTITTPTLKN PLTGEIISKG ESKEEITKDP INELTEYGPE TITPGHRDEF DPKLPTGEKE EVPGKPGIKN PETGDVVRPP VDSVTKYGPV KGDSIVEKEE IPFEKERKFN PDLAPGTEKV TREGQKGEKT ITTPTLKNPL TGVIISKGEP KEEITKDPIN ELTEYGPETI TPGHRDEFDP KLPTGEKEEV PGKPGIKNPE TGDVVRPPVD SVTKYGPVKG DSIVEKEEIP FKKERKFNPD LAPGTEKVTR EGQKGEKTIT TPTLKNPLTG EIISKGESKE EITKDPINEL TEYGPETITP GHRDEFDPKL PTGEKEEVPG KPGIKNPETG DVVRPPVDSV TKYGPVKGDS IVEKEEIPFE KERKFNPDLA PGTEKVTREG QKGEKTITTP TLKNPLTGEI ISKGESKEEI TKDPINELTE YGPETITPGH RDEFDPKLPT GEKEEVPGKP GIKNPETGDV VRPPVDSVTK YGPVKGDSIV EKEEIPFKKE RKFNPDLAPG TEKVTREGQK GEKTITTPTL KNPLTGEIIS KGESKEEITK DPINELTEYG PETWSHPQFEK",
"organism": "Staphylococcus aureus",
"uniprot_code": "Q2G2B2",
"uniprot_range_first": 419,
"uniprot_range_last": 1141,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MRDKKGPVNKRVDFLSNKLNKYSIRKFTVGTASILIGSLMYLGTQQEAEAAENNIENPTT\nLKDNVQSKEVKIEEVTNKDTAPQGVEAKSEVTSNKDTIEHEPSVKAEDISKKEDTPKEVA\nDVAEVQPKSSVTHNAETPKVRKARSVDEGSFDITRDSKNVVESTPITIQGKEHFEGYGSV\nDIQKKPTDLGVSEVTRFNVGNESNGLIGALQLKNKIDFSKDFNFKVRVANNHQSNTTGAD\nGWGFLFSKGNAEEYLTNGGILGDKGLVNSGGFKIDTGYIYTSSMDKTEKQAGQGYRGYGA\nFVKNDSSGNSQMVGENIDKSKTNFLNYADNSTNTSDGKFHGQRLNDVILTYVASTGKMRA\nEYAGKTWETSITDLGLSKNQAYNFLITSSQRWGLNQGINANGWMRTDLKGSEFTFTPEAP\nKTITELEKKVEEIPFKKERKFNPDLAPGTEKVTREGQKGEKTITTPTLKNPLTGVIISKG\nEPKEEITKDPINELTEYGPETIAPGHRDEFDPKLPTGEKEEVPGKPGIKNPETGDVVRPP\nVDSVTKYGPVKGDSIVEKEEIPFEKERKFNPDLAPGTEKVTREGQKGEKTITTPTLKNPL\nTGEIISKGESKEEITKDPINELTEYGPETITPGHRDEFDPKLPTGEKEEVPGKPGIKNPE\nTGDVVRPPVDSVTKYGPVKGDSIVEKEEIPFEKERKFNPDLAPGTEKVTREGQKGEKTIT\nTPTLKNPLTGVIISKGEPKEEITKDPINELTEYGPETITPGHRDEFDPKLPTGEKEEVPG\nKPGIKNPETGDVVRPPVDSVTKYGPVKGDSIVEKEEIPFKKERKFNPDLAPGTEKVTREG\nQKGEKTITTPTLKNPLTGEIISKGESKEEITKDPINELTEYGPETITPGHRDEFDPKLPT\nGEKEEVPGKPGIKNPETGDVVRPPVDSVTKYGPVKGDSIVEKEEIPFEKERKFNPDLAPG\nTEKVTREGQKGEKTITTPTLKNPLTGEIISKGESKEEITKDPINELTEYGPETITPGHRD\nEFDPKLPTGEKEEVPGKPGIKNPETGDVVRPPVDSVTKYGPVKGDSIVEKEEIPFKKERK\nFNPDLAPGTEKVTREGQKGEKTITTPTLKNPLTGEIISKGESKEEITKDPINELTEYGPE\nTITPGHRDEFDPKLPTGEKEEVPGKPGIKNPETGDVVRPPVDSVTKYGPVKGDSIVEKEE\nIPFEKERKFNPDLAPGTEKVTREGQKGEKTITTPTLKNPLTGEIISKGESKEEITKDPIN\nELTEYGPETITPGHRDEFDPKLPTGEKEEVPGKPGIKNPETGDVVRPPVDSVTKYGPVKG\nDSIVEKEEIPFEKERKFNPDLAPGTEKVTREGQKGEKTITTPTLKNPLTGEIISKGESKE\nEITKDPVNELTEFGGEKIPQGHKDIFDPNLPTDQTEKVPGKPGIKNPDTGKVIEEPVDDV\nIKHGPKTGTPETKTVEIPFETKREFNPKLQPGEERVKQEGQPGSKTITTPITVNPLTGEK\nVGEGQPTEEITKQPVDKIVEFGGEKPKDPKGPENPEKPSRPTHPSGPVNPNNPGLSKDRA\nKPNGPVHSMDKNDKVKKSKIAKESVANQEKKRAELPKTGLESTQKGLIFSSIIGIAGLML\nLARRRKN",
"mw": 80.922,
"total_mw": 80.922,
"number_molecules": 1,
"complex_state": null,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "20 mM Tris 200 mM NaCl 1 mM EDTA 20 mM Tris.Cl",
"concentration_unit": "mM",
"comment": null,
"additive": "200 mM NaCl, 1 mM EDTA, 20 mM Tris.Cl",
"concentration": 20.0,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "Surface Protein G (SasG) EG5 repeat protein G51-G56",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [],
"contributor_name": "Fiona",
"contributor_surname": "Whelan",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2013-11-12",
"storage_temperature": 10.0,
"cell_temperature": 10.0,
"exposure_time": 0.05,
"number_of_frames": 20,
"wavelength": 0.12,
"sample_detector_distance": 3.1,
"concentration_min": null,
"concentration_max": 4.0,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.048,
"s_max": 4.488,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDA77_fit1_model1_img.png",
"software": "SASREF",
"pdb_link": [
{
"pdb_code": "none",
"ext_code": "Q2G2B2",
"ext_type": "alphafold",
"difference_with_model": "derived"
}
],
"model_title": null,
"type_of_model": "atomic",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDA77_fit1_model1.pdb",
"model_mw": 77.47,
"bead_radius": 1.9,
"log": null,
"symmetry": "",
"comment": "",
"user": 39
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDA77_fit1_fit_img.png",
"software": null,
"chi_square_value": 1.1449,
"p_value": 0.0,
"fit_residual_plot": "fit4columns201_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDA77_fit1.fit",
"fit_log": null,
"software_version": null,
"description": null
},
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDA77_fit2_model1_img.png",
"software": "GASBOR",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDA77_fit2_model1.pdb",
"model_mw": null,
"bead_radius": 1.9,
"log": null,
"symmetry": "",
"comment": "",
"user": 39
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDA77_fit2_fit_img.png",
"software": null,
"chi_square_value": 1.0201,
"p_value": 0.011867,
"fit_residual_plot": "SASDA77_fit2_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDA77_fit2.fir",
"fit_log": null,
"software_version": null,
"description": null
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": null,
"i0_calibration_standard": null,
"description": "SAXS was used to determine whether the EG5 repeat forms an extended rod-like structure in solution.",
"experiment_description": null,
"tags": [],
"intensity_unit": null,
"experimental_mw": 69.7,
"experimental_mw_error": null,
"guinier_i0_mw": 69.7,
"guinier_i0_mw_error": null,
"porod_mw": 74.0,
"porod_mw_error": null,
"pddf_i0": 13550.0,
"pddf_i0_error": null,
"guinier_i0": 10488.6,
"guinier_i0_error": null,
"pddf_rg": 15.48,
"pddf_rg_error": null,
"guinier_rg": 14.1,
"guinier_rg_error": null,
"pddf_dmax": 57.0,
"pddf_dmax_error": null,
"porod_volume": 89.2,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 2,
"guinier_point_last": 13,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDA77_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-06-21T07:56:39.492710+02:00",
"bragg_peak": []
}View the complete manifest.json source
{
"code": "SASDA77",
"status": "success",
"started_at": "2026-08-11T15:23:19.960687+00:00",
"finished_at": "2026-08-11T15:23:29.480736+00:00",
"source_last_modified": "2023-06-21T07:56:39.492710+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDA77/",
"path": "/data/saxsdb/sasbdb/entries/77/sasda77/source/summary.json",
"size": 9943,
"sha256": "a2e81b61e0f85ef25b59536b0b26beed39cc9fb9ae3d6cf14631c754226cae58"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDA77.dat",
"path": "/data/saxsdb/sasbdb/entries/77/sasda77/source/SASDA77.dat",
"size": 75224,
"sha256": "bd7023dea56184328dfea2e11bfe8a011470ec228e763eda480e36666f3fe54a",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDA77.out",
"path": "/data/saxsdb/sasbdb/entries/77/sasda77/source/SASDA77.out",
"size": 35648,
"sha256": "858e7cddf7c2920f2374c777a03416a833a80fb19a2c3f3fb5be4f7fc615e46e",
"role": "pddf"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDA77.sascif",
"path": "/data/saxsdb/sasbdb/entries/77/sasda77/source/SASDA77.sascif",
"size": 899821,
"sha256": "07748abc291c8a1ea5e35772ed708d3f0fb3d264f05a69f77a34e177d3fc246c",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDA77.zip",
"path": "/data/saxsdb/sasbdb/entries/77/sasda77/source/SASDA77.zip",
"size": 167495,
"sha256": "2e245634122f938e6cabed6a8201eca22a663d5946443478687827e27417f638",
"role": "full_entry_zip",
"zip_member_count": 6,
"zip_validation": "central_directory_readable"
}
]
}
