查看完整 summary.json 原文
{
"code": "SASDA92",
"status": "Published",
"type_of_curve": "Extrapolated to infinite dilution",
"angular_unit": "1/nm",
"project": {
"title": "Standard proteins",
"publication": null,
"status": "released",
"submitted_date": null,
"released_date": "2015-07-07"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDA92.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDA92.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA92_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA92_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDA92_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA92_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDA92.sascif",
"experiment": {
"instrument": {
"detector": {
"type": "Custom-built",
"name": "Pilatus 1M-W",
"resolution": 0.172
},
"name": "DORIS III, DESY",
"city": "Hamburg",
"country": "Germany",
"beamline_name": "EMBL X33",
"beam_geometry": "0.60",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Catalase",
"short_name": null,
"sequence": ">sp|P00432|CATA_BOVIN Catalase OS=Bos taurus GN=CAT PE=1 SV=3\nMADNRDPASDQMKHWKEQRAAQKPDVLTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDE\nMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGES\nGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPD\nMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQ\nGIKNLSVEDAARLAHEDPDYGLRDLFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLT\nKVWPHGDYPLIPVGKLVLNRNPVNYFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPD\nTHRHRLGPNYLQIPVNCPYRARVANYQRDGPMCMMDNQGGAPNYYPNSFSAPEHQPSALE\nHRTHFSGDVQRFNSANDDNVTQVRTFYLKVLNEEQRKRLCENIAGHLKDAQLFIQKKAVK\nNFSDVHPEYGSRIQALLDKYNEEKPKNAVHTYVQHGSHLSAREKANL\n\n",
"organism": "Bos taurus",
"uniprot_code": "P00432",
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "tetramer",
"molecular_type": "protein",
"uniprot_sequence": "MADNRDPASDQMKHWKEQRAAQKPDVLTTGGGNPVGDKLNSLTVGPRGPLLVQDVVFTDE\nMAHFDRERIPERVVHAKGAGAFGYFEVTHDITRYSKAKVFEHIGKRTPIAVRFSTVAGES\nGSADTVRDPRGFAVKFYTEDGNWDLVGNNTPIFFIRDALLFPSFIHSQKRNPQTHLKDPD\nMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKTDQ\nGIKNLSVEDAARLAHEDPDYGLRDLFNAIATGNYPSWTLYIQVMTFSEAEIFPFNPFDLT\nKVWPHGDYPLIPVGKLVLNRNPVNYFAEVEQLAFDPSNMPPGIEPSPDKMLQGRLFAYPD\nTHRHRLGPNYLQIPVNCPYRARVANYQRDGPMCMMDNQGGAPNYYPNSFSAPEHQPSALE\nHRTHFSGDVQRFNSANDDNVTQVRTFYLKVLNEEQRKRLCENIAGHLKDAQLFIQKKAVK\nNFSDVHPEYGSRIQALLDKYNEEKPKNAVHTYVQHGSHLSAREKANL",
"mw": 59.91,
"total_mw": 239.6,
"number_molecules": 4,
"complex_state": null,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "PBS",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": 7.0,
"ph": 7.4,
"deuteration": null
},
"purity_method": null,
"name": "Catalase in PBS",
"ext_coefficient": 10.95,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "EMBL-Hamburg",
"address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
"full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
"webpage": "http://www.embl-hamburg.de/index.php"
}
],
"contributor_name": "Darja",
"contributor_surname": "Ruskule",
"orcid": null
}
],
"concentration_method": "nanodrop",
"concentration_unit": "mg/ml",
"date": "2012-09-17",
"storage_temperature": 10.0,
"cell_temperature": 10.0,
"exposure_time": 15.0,
"number_of_frames": 8,
"wavelength": 0.15,
"sample_detector_distance": 2.7,
"concentration_min": 0.09,
"concentration_max": 6.93,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.183,
"s_max": 6.015,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDA92_fit1_model1_img.png",
"software": "PDB (Protein Data Bank)",
"pdb_link": [
{
"pdb_code": "4blc",
"ext_code": "4blc",
"ext_type": "pdb",
"difference_with_model": null
}
],
"model_title": null,
"type_of_model": "atomic",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDA92_fit1_model1.pdb",
"model_mw": 232.6,
"bead_radius": 0.0,
"log": null,
"symmetry": "",
"comment": "",
"user": 1
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDA92_fit1_fixed_fit_img.png",
"software": null,
"chi_square_value": 8.602489,
"p_value": 0.0,
"fit_residual_plot": "SASDA92_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDA92_fit1.fit",
"fit_log": null,
"software_version": null,
"description": null
},
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDA92_fit2_model1_img.png",
"software": "DAMMIF",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDA92_fit2_model1.pdb",
"model_mw": 187.0,
"bead_radius": 2.3,
"log": "https://www.sasbdb.org/media/log_files/92_excut_8.log",
"symmetry": "P4",
"comment": "",
"user": 1
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDA92_fit2_fixed_fit_img.png",
"software": null,
"chi_square_value": 4.460544,
"p_value": 0.0,
"fit_residual_plot": "SASDA92_fit2_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDA92_fit2.fir",
"fit_log": null,
"software_version": null,
"description": null
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "GNOM",
"i0_calibration_standard": "BSA",
"description": null,
"experiment_description": null,
"tags": [
"X33"
],
"intensity_unit": null,
"experimental_mw": 254.0,
"experimental_mw_error": null,
"guinier_i0_mw": 254.0,
"guinier_i0_mw_error": null,
"porod_mw": null,
"porod_mw_error": null,
"pddf_i0": 198.2,
"pddf_i0_error": null,
"guinier_i0": 222.0,
"guinier_i0_error": null,
"pddf_rg": 3.74,
"pddf_rg_error": null,
"guinier_rg": 4.1,
"guinier_rg_error": null,
"pddf_dmax": 10.9,
"pddf_dmax_error": null,
"porod_volume": 296.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 1,
"guinier_point_last": 48,
"pddf_point_first": 46,
"pddf_point_last": 76,
"i0_calibration_standard_data": "https://www.sasbdb.org/media/standard_curves/bsa_019_4.dat",
"intensities_log_log_plot": "SASDA92_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-05-25T11:21:52.654103+02:00",
"bragg_peak": []
}查看完整 manifest.json 原文
{
"code": "SASDA92",
"status": "success",
"started_at": "2026-08-11T13:33:10.544979+00:00",
"finished_at": "2026-08-11T13:33:27.713506+00:00",
"source_last_modified": "2023-05-25T11:21:52.654103+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDA92/",
"path": "/data/saxsdb/sasbdb/entries/92/sasda92/source/summary.json",
"size": 8300,
"sha256": "9504203a8f0d174aedb9806c4827a8b4d103e9ca7c91d8a3824047b1645bbb74"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDA92.dat",
"path": "/data/saxsdb/sasbdb/entries/92/sasda92/source/SASDA92.dat",
"size": 96423,
"sha256": "dba1302ef4db28a0000086502e22b0641b33927998bfeee7f20dde29ea572418",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDA92.out",
"path": "/data/saxsdb/sasbdb/entries/92/sasda92/source/SASDA92.out",
"size": 59792,
"sha256": "0bd031047d37a0206a7b434333aafd55db34a2b0416a75058a1c24de1ab10c94",
"role": "pddf"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDA92.sascif",
"path": "/data/saxsdb/sasbdb/entries/92/sasda92/source/SASDA92.sascif",
"size": 2362342,
"sha256": "50634d6b2f9ffdddc0501b7476765d4b2a6bcd1c397820578af9005daa5b0ab6",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDA92.zip",
"path": "/data/saxsdb/sasbdb/entries/92/sasda92/source/SASDA92.zip",
"size": 473551,
"sha256": "4b523839659b717782511c316c66b39ea314b20565b7585b177216c9d470fae0",
"role": "full_entry_zip",
"zip_member_count": 6,
"zip_validation": "central_directory_readable"
}
]
}
