查看完整 summary.json 原文
{
"code": "SASDAC6",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "The BR domain of PsrP interacts with extracellular DNA to promote bacterial aggregation; structural insights into pneumococcal biofilm formation.",
"publication": {
"title": "The BR domain of PsrP interacts with extracellular DNA to promote bacterial aggregation; structural insights into pneumococcal biofilm formation.",
"author_list": "Schulte T, Mikaelsson C, Beaussart A, Kikhney A, Deshmukh M, Wolniak S, Pathak A, Ebel C, Löfling J, Fogolari F, Henriques-Normark B, Dufrêne YF, Svergun D, Nygren PÅ, Achour A",
"journal": "Sci Rep",
"doi": "10.1038/srep32371",
"pmid": "27582320",
"published_date": "2016 Sep 1"
},
"status": "released",
"submitted_date": "2015-01-15",
"released_date": "2016-09-08"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDAC6.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDAC6.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAC6_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAC6_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDAC6_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAC6_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDAC6.sascif",
"experiment": {
"instrument": {
"detector": {
"type": "Dectris",
"name": "Pilatus 1M",
"resolution": 172.0
},
"name": "ESRF",
"city": "Grenoble",
"country": "France",
"beamline_name": "BM29",
"beam_geometry": "",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Functional binding region (187-385) of the pneumococcal serine-rich repeat protein",
"short_name": "PsrP BR(187-385)",
"sequence": "HHHHHHSGNTIVNGAPAINASLNIAKSETKVYTGEGVDSVYRVPIYYKLKVTNDGSKLTFTYTVTYVNPKTNDLGNISSM\r\nRPGYSIYNSGTSTQTMLTLGSDLGKPSGVKNYITDKNGRQVLSYNTSTMTTQGSGYTWGNGAQMNGFFAKKGYGLTSSWTVPITGTDTSFTFTPYAARTDRIGINYFNGGGKVVESSTTSQSLSQ",
"organism": "Streptococcus pneumoniae",
"uniprot_code": "A0A0H2URK1",
"uniprot_range_first": 187,
"uniprot_range_last": 385,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MTETVEDKVSHSITGLDILKGIVAAGAVISGTVATQTKVFTNESAVLEKTVEKTDALATN\nDTVVLGTISTSNSASSTSLSASESASTSASESASTSASTSASTSASESASTSASTSISAS\nSTVVGSQTAAATEATAKKVEEDRKKPASDYVASVTNVNLQSYAKRRKRSVDSIEQLLASI\nKNAAVFSGNTIVNGAPAINASLNIAKSETKVYTGEGVDSVYRVPIYYKLKVTNDGSKLTF\nTYTVTYVNPKTNDLGNISSMRPGYSIYNSGTSTQTMLTLGSDLGKPSGVKNYITDKNGRQ\nVLSYNTSTMTTQGSGYTWGNGAQMNGFFAKKGYGLTSSWTVPITGTDTSFTFTPYAARTD\nRIGINYFNGGGKVVESSTTSQSLSQSKSLSVSASQSASASASTSASASASTSASASASTS\nASASASTSASVSASTSASASASTSASASASTSASESASTSASASASTSASASASTSASAS\nASTSASESASTSASASASTSASESASTSASASASTSASASASTSASGSASTSTSASASTS\nASASASTSASASASISASESASTSASESASTSTSASASTSASESASTSASASASTSASAS\nASTSASASASTSASASTSASESASTSASASASTSASASASTSASASASTSASASASTSAS\nVSASTSASASASTSASASASTSASESASTSASASASTSASASASTSASASASTSASASAS\nTSASASASTSASESASTSASASASTSASASASTSASASASTSASASASTSASASASISAS\nESASTSASASASTSASASASTSASASASTSASESASTSASASASTSASASASTSASASAS\nTSASASASTSASASASTSASASASTSASESASTSASASASTSASESASTSASASASTSAS\nASASTSASASASTSASASASTSASASASTSASASASTSASASTSASESASTSASASASTS\nASASASTSASASASTSASESASTSASASASTSASASASTSASASASTSASASASTSASAS\nASISASESASTSASASASTSASVSASTSASASASTSASESASTSASASASTSASESASTS\nASASASTSASASASISASESASTSASASASTSASASASTSASASASTSASESASTSTSAS\nASTSASESASTSASASASTSASASASTSASASASTSASASASTSASASTSASESASTSAS\nASASTSASASASTSASASASTSASASASTSASASASTSASASASTSASASASTSASASAS\nTSASESASTSASASASTSASASASTSASASASTSASASASTSASVSASTSASESASTSAS\nASASTSASASASTSASESASTSASASASTSASESASTSASASASTSASASASTSASASAS\nTSASASASTSASASASTSASASASTSASASASTSASASASTSASASASTSASASASTSAS\nASASTSASASASTSASASASISASESASTSASASASTSASASASTSASVSASTSASASAS\nTSASASASISASESASTSASASASTSASASASTSASASASTSASASASISASESASTSAS\nASASTSASASASTSASASASTSASASASTSASASASTSASASASTSASASASTSASASAS\nTSASASASTSASESASTSASASASTSASASASTSASASASTSASVSASTSASESASTSAS\nASASTSASASASTSASASASTSASESASTSASASASTSASASASTSASESASTSASASAS\nTSASASASTSASASASTSASASASASTSASASASTSASASASTSASASASISASESASTS\nASESASTSTSASASTSASESASTSASASASTSASASASTSASASASTSASASTSASESAS\nTSASASASTSASASASTSASASASTSASASASTSASASASTSASVSASTSASASASTSAS\nASASTSASESASTSASASASTSASASASTSASASASTSASASASTSASASASTSASESAS\nTSASASASTSASASASTSASASASTSASASASTSASASASISASESASTSASASASTSAS\nASASTSASASASTSASESASTSASASASTSASASASTSASASASTSASASASTSASASAS\nTSASASASTSASESASTSASASASTSASESASTSASASASTSASASASTSASASASTSAS\nASASTSASASASTSASASASTSASASTSASESASTSASASASTSASASASTSASASASTS\nASESASTSASASASTSASASASTSASASASTSASASASTSASASASISASESASTSASAS\nASTSASVSASTSASASASTSASESASTSASASASTSASESASTSASASASTSASASASIS\nASESASTSASASASTSASASASTSASASASTSASESASTSTSASASTSASESASTSASAS\nASTSASASASTSASASASTSASASASTSASASTSASESASTSASASASTSASASASTSAS\nASASTSASASASTSASASASTSASASASTSASASASTSASASASTSASASASTSASASAS\nTSASASASTSASESASTSASASASTSASASASTSASASASTSASVSASTSASESASTSAS\nASASTSASASASTSASASASTSASESASTSASASASTSASASASTSASESASTSASASAS\nTSASASASTSASASASTSASASASASTSASASASTSASASASTSASASASISASESASTS\nASASASASTSASASASTSASASASTSASASASISASESASTSASESASTSTSASASTSAS\nESASTSASASASTSASASASTSASASASTSASASTSASESASTSASASASTSASASASTS\nASASASTSASASASTSASASASTSASVSASTSASASASTSASASASTSASESASTSASAS\nTSASESASTSASASASTSASASASTSASASASTSASESASTSASASASTSASASASTSAS\nESASTSASASASTSASASASTSASASASTSASESASTSASASASTSASESASTSASASAS\nTSASASASTSASGSASTSTSASASTSASASASTSASASASISASESASTSASESASTSTS\nASASTSASESASTSASASASTSASASASTSASASASTSASASTSASESASTSASASASTS\nASASASTSASASASTSASASASTSASVSASTSASASASTSASASASTSASESASTSASAS\nASTSASASASTSASASASTSASASASTSASASASTSASESASTSASASASTSASASASTS\nASASASTSASASASTSASASASISASESASTSASASASTSASASASTSASASASTSASES\nASTSASASASTSASASASTSASASASTSASASASTSASASASTSASASASTSASESASTS\nASASASTSASESASTSASASASTSASASASTSASASASTSASASASTSASASASTSASAS\nASTSASASTSASESASTSASASASTSASASASTSASASASTSASESASTSASASASTSAS\nASASTSASASASTSASASASTSASASASISASESASTSASASASTSASVSASTSASASAS\nTSASESASTSASASASTSASESASTSASASASTSASASASISASESASTSASASASTSAS\nASASTSASASASTSASESASTSTSASASTSASESASTSASASASTSASASASTSASASAS\nTSASASASTSASASTSASESASTSASASASTSASASASTSASASASTSASASASTSASAS\nASTSASASASTSASASASTSASASASTSASESASTSASASASTSASASASTSASASASTS\nASASASTSASVSASTSASESASTSASASASTSASASASTSASESASTSASASASTSASES\nASTSASASASTSASASASTSASASASTSASASASTSASASASTSASASASTSASASASTS\nASASASTSASASASTSASASASTSASASASTSASASASTSASASASISASESASTSASAS\nASTSASASASTSASVSASTSASASASTSASASASISASESASTSASASASTSASASASTS\nASASASTSASASASISASESASTSASASASTSASASASTSASASASTSASASASTSASAS\nASTSASASASTSASASASTSASASASTSASASASTSASESASTSASASASTSASASASIS\nASESASTSASASASTSASASASTSASASASTSASESASTSTSASASTSASESASTSASAS\nASTSASASASTSASASASTSASASASTSASASTSASESASTSASASASTSASASASTSAS\nASASTSASASASTSASASASTSASASASTSASASASTSASASASTSASESASTSASASAS\nTSASASASTSASASASTSASASASTSASVSASTSASESASTSASASASTSASASASTSAS\nESASTSASASASTSASESASTSASASASTSASASASTSASASASTSASASASTSASASAS\nTSASASASTSASASASTSASASASTSASASASTSASASASTSASASASTSASASASTSAS\nASASISASESASTSASASASTSASASASTSASVSASTSASASASTSASASASISASESAS\nTSASASASTSASASASTSASASASTSASASASISASESASTSASASASTSASASASTSAS\nASASTSASASASTSASASASTSASASASTSASASASTSASASASTSASASASTSASASAS\nTSASASASTSASASASTSASASASTSASASASTSVSNSANHSNSQVGNTSGSTGKSQKEL\nPNTGTESSIGSVLLGVLAAVTGIGLVAKRRKRDEEE",
"mw": 22.12,
"total_mw": 22.12,
"number_molecules": 1,
"complex_state": null,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "PBS 5 % Glycerol",
"concentration_unit": null,
"comment": "Phosphate buffered saline",
"additive": "Glycerol 5.000 %",
"concentration": null,
"pka": null,
"ph": 7.4,
"deuteration": null
},
"purity_method": null,
"name": "PsrP functional binding region",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "EMBL-Hamburg",
"address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
"full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
"webpage": "http://www.embl-hamburg.de/index.php"
}
],
"contributor_name": "Al",
"contributor_surname": "Kikhney",
"orcid": "https://orcid.org/0000-0003-1321-3956"
}
],
"concentration_method": null,
"concentration_unit": "mg/ml",
"date": "2013-02-27",
"storage_temperature": 20.0,
"cell_temperature": 20.0,
"exposure_time": 1.0,
"number_of_frames": 10,
"wavelength": 0.09919,
"sample_detector_distance": 2.43,
"concentration_min": null,
"concentration_max": 2.9,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.072,
"s_max": 4.421,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDAC6_fit1_model1_img.png",
"software": "EOM/RANCH",
"pdb_link": [],
"model_title": null,
"type_of_model": "mix",
"software_version": "1.3",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDAC6_fit1_model1.pdb",
"model_mw": 22.35,
"bead_radius": 1.9,
"log": "https://www.sasbdb.org/media/log_files/GA001_9pahFzE.log",
"symmetry": "",
"comment": "",
"user": 4
},
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDAC6_fit1_model2_img.png",
"software": "EOM/RANCH",
"pdb_link": [],
"model_title": null,
"type_of_model": "mix",
"software_version": "1.4",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDAC6_fit1_model2.pdb",
"model_mw": 22.35,
"bead_radius": 1.9,
"log": null,
"symmetry": "",
"comment": "",
"user": 4
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDAC6_fit1_fixed_fit_img.png",
"software": null,
"chi_square_value": 0.926,
"p_value": 0.0,
"fit_residual_plot": "fit4columns470_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDAC6_fit1.fit",
"fit_log": null,
"software_version": null,
"description": null
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "GNOM",
"i0_calibration_standard": "BSA",
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": null,
"experimental_mw": 18.0,
"experimental_mw_error": null,
"guinier_i0_mw": 17.0,
"guinier_i0_mw_error": null,
"porod_mw": 23.6,
"porod_mw_error": null,
"pddf_i0": 18.64,
"pddf_i0_error": null,
"guinier_i0": 18.511,
"guinier_i0_error": null,
"pddf_rg": 2.11,
"pddf_rg_error": null,
"guinier_rg": 2.039,
"guinier_rg_error": null,
"pddf_dmax": 7.8,
"pddf_dmax_error": null,
"porod_volume": 37.7,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 40,
"guinier_point_last": 108,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDAC6_datloglog_img.png",
"symmetry": null,
"last_modified": "2020-08-28T15:28:14.586213+02:00",
"bragg_peak": []
}
查看完整 manifest.json 原文
{
"code": "SASDAC6",
"status": "success",
"started_at": "2026-08-11T16:26:06.479102+00:00",
"finished_at": "2026-08-11T16:26:15.469696+00:00",
"source_last_modified": "2020-08-28T15:28:14.586213+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDAC6/",
"path": "/data/saxsdb/sasbdb/entries/c6/sasdac6/source/summary.json",
"size": 12338,
"sha256": "fda91a08a277a3a0cf2d2976ce1055335e705017e9322876427c47c370c052f6"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDAC6.dat",
"path": "/data/saxsdb/sasbdb/entries/c6/sasdac6/source/SASDAC6.dat",
"size": 45270,
"sha256": "07975d0c68aba4e94d887655f6d25e8ff392d29a4c70d55dfa5d3dc3851a9d04",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDAC6.out",
"path": "/data/saxsdb/sasbdb/entries/c6/sasdac6/source/SASDAC6.out",
"size": 36002,
"sha256": "13037836c296bd36ccac20bfaf14b831c2dc003eee73ff90ef8a11d19a1d8c07",
"role": "pddf"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDAC6.sascif",
"path": "/data/saxsdb/sasbdb/entries/c6/sasdac6/source/SASDAC6.sascif",
"size": 407448,
"sha256": "6dc576e77964e1428c0c555698d9c9c8a822f6d4db0605afcf04d2f592e0f7b8",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDAC6.zip",
"path": "/data/saxsdb/sasbdb/entries/c6/sasdac6/source/SASDAC6.zip",
"size": 91347,
"sha256": "8f7fa460ff70b6631901103ad3ca817c55c96bc73c32b7054b94743ca7c25355",
"role": "full_entry_zip",
"zip_member_count": 8,
"zip_validation": "central_directory_readable"
}
]
}