The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.
Every source field is expanded here, including empty values, list members and fields already shown above.
View the complete summary.json source
{
"code": "SASDAC7",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "Modeling the ComD/ComE/comcde interaction network using small angle X-ray scattering.",
"publication": {
"title": "Modeling the ComD/ComE/comcde interaction network using small angle X-ray scattering.",
"author_list": "Sanchez D, Boudes M, van Tilbeurgh H, Durand D, Quevillon-Cheruel S",
"journal": "FEBS J",
"doi": "10.1111/febs.13240",
"pmid": "25702779",
"published_date": "2015 Apr"
},
"status": "released",
"submitted_date": "2015-01-12",
"released_date": "2015-07-07"
},
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"experiment": {
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"name": "AVIEX PCCD170170",
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},
"name": "SOLEIL",
"city": "Saint-Aubin",
"country": "France",
"beamline_name": "SWING",
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"type_of_source": "X-ray synchrotron",
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{
"long_name": "comcde",
"short_name": null,
"sequence": "5’-AAGTACACTTTGGGAGAAAAAAATGACAGTTGAGAGAA-3’\r\n3’-TTCATGTGAAACCCTCTTTTTTTACTGTCAACTCTCTT-5'",
"organism": "Streptococcus pneumoniae",
"uniprot_code": null,
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"oligomerization": "other",
"molecular_type": "DNA",
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"mw": 23.5,
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{
"long_name": "Response regulator",
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"sequence": "VVDYFDYNYKGNDLKIPYHDILYIETTGVSHKLRIIGKNFAKE\r\nFYGTMTDIQEKDKHTQRFYSPHKSFLVNIGNIREIDRKNLEIVFYEDHRCPISRLKIRKL\r\nKDILEKKSQKHHHHHH",
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"oligomerization": "dimer",
"molecular_type": "protein",
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"deuteration": null,
"molecule_source": "biological",
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}
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"concentration_unit": "mM",
"comment": null,
"additive": "500 mM NaCl, 5% (vol/vol) glycerol, 5 mM β-mercaptoethanol",
"concentration": 50.0,
"pka": null,
"ph": 6.2,
"deuteration": null
},
"purity_method": "size-exclusion high-performance liquid chromatography (SEC-HPLC) column.",
"name": "Complex LytTR-comcde",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
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},
"contributor": [
{
"affiliation": [],
"contributor_name": "Dominique",
"contributor_surname": "Durand",
"orcid": null
}
],
"concentration_method": "size-exclusion high-performance liquid chromatography (SEC-HPLC) column.",
"concentration_unit": "mg/ml",
"date": "2013-06-02",
"storage_temperature": 10.0,
"cell_temperature": 10.0,
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"model_title": null,
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"comment": "",
"user": 40
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"description": "Use of SAXS to describe the interaction between the LytTR domain of the response regulator ComE from S. pneumonia and the promoter region comcde.\r\nThe complex is constituted of two monomers of LytTR and one molecule of comcde.\r\nThe SAXS data were collected directly after elution through an on-line size-exclusion high-performance liquid chromatography (SEC-HPLC) column.\r\nThe molecular weight is not estimated from I(0) because the concentration of the complex cannot be accurately determined. It is obtained from the macromolecule volume using the method developed by Craievich’s team (the SAXS Mow program). ",
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"intensities_log_log_plot": "SASDAC7_datloglog_img.png",
"symmetry": null,
"last_modified": "2019-12-06T13:07:15.624532+01:00",
"bragg_peak": []
}View the complete manifest.json source
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