The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.
Every source field is expanded here, including empty values, list members and fields already shown above.
View the complete summary.json source
{
"code": "SASDAE5",
"status": "Published",
"type_of_curve": "Merged",
"angular_unit": "1/nm",
"project": {
"title": "Conformational analysis of a genetically encoded FRET biosensor by SAXS.",
"publication": {
"title": "Conformational analysis of a genetically encoded FRET biosensor by SAXS.",
"author_list": "Mertens HD, Piljić A, Schultz C, Svergun DI",
"journal": "Biophys J",
"doi": "10.1016/j.bpj.2012.05.009",
"pmid": "22735537",
"published_date": "2012 Jun 20"
},
"status": "released",
"submitted_date": null,
"released_date": "2015-07-07"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDAE5.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDAE5.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAE5_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAE5_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDAE5_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAE5_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDAE5.sascif",
"experiment": {
"instrument": {
"detector": {
"type": "Custom-built",
"name": "Pilatus 1M-W",
"resolution": 0.172
},
"name": "DORIS III, DESY",
"city": "Hamburg",
"country": "Germany",
"beamline_name": "EMBL X33",
"beam_geometry": "0.60",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "CYNEX4 FRET probe, (eYFP-AnnexinA4-eCFP)",
"short_name": "CYNEX4",
"sequence": "MASWSHPQFEKGAMASKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWP\r\nTLVTTFSYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDF\r\nKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLS\r\nTQSALSKDPNEKRDHMVLLEFVTAAGITLGMDELYKRILATMAMATKGGTVKAASGFNAMEDAQTLRKAMKG\r\nLGTDEDAIISVLAYRNTAQRQEIRTAYKSTIGRDLIDDLKSELSGNFEQVIVGMMTPTVLYDVQELRRAMKG\r\nAGTDEGCLIEILASRTPEEIRRISQTYQQQYGRSLEDDIRSDTSFMFQRVLVSLSAGGRDEGNYLDDALVRQ\r\nDAQDLYEAGEKKWGTDEVKFLTVLCSRNRNHLLHVFDEYKRISQKDIEQSIKSETSGSFEDALLAIVKCMRN\r\nKSAYFAEKLYKSMKGLGTDDNTLIRVMVSRAEIDMLDIRAHFKRLYGKSLYSFIKGDTSGDYRKVLLVLCGG\r\nDDSRDPPVATMASKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLV\r\nTTFSYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKED\r\nGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQS\r\nALSKDPNEKRDHMVLLEFVTAAGITLGMDELYK",
"organism": "Homo sapiens",
"uniprot_code": null,
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": null,
"mw": 92.8,
"total_mw": 92.8,
"number_molecules": 1,
"complex_state": null,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "50 mM HEPES 150 mM NaCl 1 mM EGTA",
"concentration_unit": "mM",
"comment": "50 mM HEPES, pH 7.5, 150 mM NaCl, 1 mM EGTA",
"additive": "NaCl 150.000 mM",
"concentration": 50.0,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "CYNEX4",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "EMBL-Hamburg",
"address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
"full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
"webpage": "http://www.embl-hamburg.de/index.php"
}
],
"contributor_name": "Haydyn",
"contributor_surname": "Mertens",
"orcid": null
}
],
"concentration_method": "A280",
"concentration_unit": null,
"date": "2010-09-11",
"storage_temperature": 10.0,
"cell_temperature": 10.0,
"exposure_time": 15.0,
"number_of_frames": 8,
"wavelength": 0.15,
"sample_detector_distance": 2.7,
"concentration_min": 0.8,
"concentration_max": 12.8,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.163,
"s_max": 6.016,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDAE5_fit1_model1_img.png",
"software": "DAMMIF",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDAE5_fit1_model1.pdb",
"model_mw": 95.0,
"bead_radius": 2.6,
"log": "https://www.sasbdb.org/media/log_files/cnx_7.log",
"symmetry": "",
"comment": "",
"user": 12
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDAE5_fit1_fixed_fit_img.png",
"software": null,
"chi_square_value": 1.6552,
"p_value": 0.1607,
"fit_residual_plot": "SASDAE5_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDAE5_fit1.fir",
"fit_log": null,
"software_version": null,
"description": null
},
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDAE5_fit2_model1_img.png",
"software": "CORAL",
"pdb_link": [
{
"pdb_code": "none",
"ext_code": "PED00007",
"ext_type": "ped",
"difference_with_model": "identical"
}
],
"model_title": null,
"type_of_model": "mix",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDAE5_fit2_model1.pdb",
"model_mw": 92.56,
"bead_radius": 1.9,
"log": "https://www.sasbdb.org/media/log_files/cnx.log",
"symmetry": "",
"comment": "",
"user": 12
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDAE5_fit2_fixed_fit_img.png",
"software": null,
"chi_square_value": 1.9048,
"p_value": 0.0002,
"fit_residual_plot": "SASDAE5_fit2_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDAE5_fit2.fit",
"fit_log": null,
"software_version": null,
"description": null
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": null,
"i0_calibration_standard": "BSA",
"description": "PED: https://proteinensemble.org/entries/PED00007",
"experiment_description": null,
"tags": [
"X33",
"PED"
],
"intensity_unit": null,
"experimental_mw": 84.0,
"experimental_mw_error": null,
"guinier_i0_mw": 84.0,
"guinier_i0_mw_error": null,
"porod_mw": null,
"porod_mw_error": null,
"pddf_i0": null,
"pddf_i0_error": null,
"guinier_i0": 86.9,
"guinier_i0_error": null,
"pddf_rg": 3.8,
"pddf_rg_error": null,
"guinier_rg": 3.7,
"guinier_rg_error": null,
"pddf_dmax": 12.8,
"pddf_dmax_error": null,
"porod_volume": 135.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 1,
"guinier_point_last": 53,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDAE5_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-05-25T11:21:52.654103+02:00",
"bragg_peak": []
}View the complete manifest.json source
{
"code": "SASDAE5",
"status": "success",
"started_at": "2026-08-11T14:46:08.529409+00:00",
"finished_at": "2026-08-11T14:46:18.013943+00:00",
"source_last_modified": "2023-05-25T11:21:52.654103+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDAE5/",
"path": "/data/saxsdb/sasbdb/entries/e5/sasdae5/source/summary.json",
"size": 8473,
"sha256": "098e90ea6ddbc5ba1cc3f056901f6aa30312f44d33e24c395074912dcd090ec2"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDAE5.dat",
"path": "/data/saxsdb/sasbdb/entries/e5/sasdae5/source/SASDAE5.dat",
"size": 96391,
"sha256": "882fde7d359287acb6e423f135a7e02a16ee67d7bcbdc56d08c2eaf3de2051a1",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDAE5.out",
"path": "/data/saxsdb/sasbdb/entries/e5/sasdae5/source/SASDAE5.out",
"size": 33471,
"sha256": "c4e70171b38bb12c85e0bd16967676c0cf42233af9ff958a7a5b572a02c669e7",
"role": "pddf"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDAE5.sascif",
"path": "/data/saxsdb/sasbdb/entries/e5/sasdae5/source/SASDAE5.sascif",
"size": 1011280,
"sha256": "4e5699111c50e87131417858f7a79880c36d7fd888f51444e2f731086fcf8ade",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDAE5.zip",
"path": "/data/saxsdb/sasbdb/entries/e5/sasdae5/source/SASDAE5.zip",
"size": 176148,
"sha256": "7ef0b3c8103ef11619fbf2a86e390097e95ae455624ac19536d92205550abbd8",
"role": "full_entry_zip",
"zip_member_count": 6,
"zip_validation": "central_directory_readable"
}
]
}
