SASDAK5

Myomesin-1 My12-My13

Data type: SASBDB experimental data Status: Published Curve type: Merged Last updated: 2023-05-25T11:22:16.556436+02:00

Use of SAXS to discriminate between different crystallographic dimers of the C-terminal construct of myomesin-1 containing two IG-like domains.

▼

1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · Myomesin-1 My12-My13

Concentration2.8 – 7.1 Buffer / pH25 mM Tris/HCl 150 mM NaCl / 7.5
Experimental temperature— Facility / beamlineDORIS III, DESY / EMBL X33
Wavelength— nmExposure— s × —

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
Myomesin-1
View sequence
IALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE
proteinHomo sapiensP521791225–1443dimerMolecule count 222.94 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
11001[3]0.103397–4.46907 1/nmHas uncertainty columnMissing 01sasbdb/entries/k5/sasdak5/source/SASDAK5.dat
▼

2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)14.5—nm
i0Guinier10070.0——
i0P(r)10070.0——
mwExperimental45.87—kDa
mwGuinier I(0)47.0—kDa
porod_volumePorod56.0—nm³
rgGuinier4.0—nm
rgP(r)4.1—nm

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

▼

3. Source Fits and Models Source Fits & Models

▶

4. Source File Index Source Files

▶

5. Experiment Description and Publication Experiment & Publication

▼

6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name25 mM Tris/HCl 150 mM NaClBuffer concentration—
pH7.5AdditivesNaCl 150.000 mM
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2005-05-07Storage / measurement temperature— / —
Exposure time—Frames—
Wavelength—Sample-to-detector distance—
SourceX-ray synchrotronDetectorMAR 345 Image Plate
Facility / beamlineDORIS III, DESY / EMBL X33 · Hamburg, Germany
q range0.103 – 4.469Sample volume / flow rate— / —

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

CategoryFileStatusSizeChecksumDownload and View
curvesasbdb/entries/k5/sasdak5/source/SASDAK5.datdownloaded4505623796c3558b8f33e7800f8342fccd66643c3c3e92f7e63b8281b36f8dbc7b550DownloadView source fileSource site
full_entry_zipsasbdb/entries/k5/sasdak5/source/SASDAK5.zipdownloaded2704955acadfebc827481d1cacd78162aadc9ea237db56671f7c8ac446ea230b697377DownloadView source fileSource site
pddfsasbdb/entries/k5/sasdak5/source/SASDAK5.outdownloaded393667e6d9f4e63a21e4bfe5526e80991402b274b2ba992d42c7513bdc7aa4d80713fDownloadView source fileSource site
sascifsasbdb/entries/k5/sasdak5/source/SASDAK5.sascifdownloaded12108914c65bd64c141b301ca9e18ce338c26b01534d9a3848b54ae73394b4b45767317DownloadView source fileSource site
summarysasbdb/entries/k5/sasdak5/source/summary.jsondownloaded103617615f4893c9711a6acc577118ad23020ba9e7140c34722980abdcb27fbee6d7eDownloadView source fileSource site
curve:source record
{
  "path": "/data/saxsdb/sasbdb/entries/k5/sasdak5/source/SASDAK5.dat",
  "role": "curve",
  "sha256": "23796c3558b8f33e7800f8342fccd66643c3c3e92f7e63b8281b36f8dbc7b550",
  "size": 45056,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/intensities_files/SASDAK5.dat"
}
full_entry_zip:source record and ZIP contents (8 items)
{
  "path": "/data/saxsdb/sasbdb/entries/k5/sasdak5/source/SASDAK5.zip",
  "role": "full_entry_zip",
  "sha256": "5acadfebc827481d1cacd78162aadc9ea237db56671f7c8ac446ea230b697377",
  "size": 270495,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/zip_directories/SASDAK5.zip",
  "zip_member_count": 8,
  "zip_members": [
    {
      "crc32": "5bbfaadc",
      "name": "SASDAK5/experimental_data/SASDAK5.dat",
      "size": 45056
    },
    {
      "crc32": "42f6125a",
      "name": "SASDAK5/pddf/SASDAK5.out",
      "size": 39366
    },
    {
      "crc32": "ded6a7ef",
      "name": "SASDAK5/SASDAK5_fit1.fit",
      "size": 44385
    },
    {
      "crc32": "b0789aaa",
      "name": "SASDAK5/SASDAK5_fit1_model1.pdb",
      "size": 344817
    },
    {
      "crc32": "c271dc9a",
      "name": "SASDAK5/SASDAK5_fit2.fit",
      "size": 44385
    },
    {
      "crc32": "c7d59344",
      "name": "SASDAK5/SASDAK5_fit2_model1.pdb",
      "size": 272323
    },
    {
      "crc32": "5800fa78",
      "name": "SASDAK5/SASDAK5_fit3.fit",
      "size": 44385
    },
    {
      "crc32": "b0d9cc30",
      "name": "SASDAK5/SASDAK5_fit3_model1.pdb",
      "size": 272872
    }
  ],
  "zip_validation": "central_directory_readable"
}
pddf:source record
{
  "path": "/data/saxsdb/sasbdb/entries/k5/sasdak5/source/SASDAK5.out",
  "role": "pddf",
  "sha256": "7e6d9f4e63a21e4bfe5526e80991402b274b2ba992d42c7513bdc7aa4d80713f",
  "size": 39366,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/p_of_R_files/SASDAK5.out"
}
sascif:source record
{
  "path": "/data/saxsdb/sasbdb/entries/k5/sasdak5/source/SASDAK5.sascif",
  "role": "sascif",
  "sha256": "4c65bd64c141b301ca9e18ce338c26b01534d9a3848b54ae73394b4b45767317",
  "size": 1210891,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDAK5.sascif"
}
summary:source record
{
  "path": "/data/saxsdb/sasbdb/entries/k5/sasdak5/source/summary.json",
  "sha256": "7615f4893c9711a6acc577118ad23020ba9e7140c34722980abdcb27fbee6d7e",
  "size": 10361,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDAK5/"
}

All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json:202 field values
Field pathRaw value
codeSASDAK5
statusPublished
type_of_curveMerged
angular_unit1/nm
project.titleMolecular basis of the C-terminal tail-to-tail assembly of the sarcomeric filament protein myomesin.
project.publication.titleMolecular basis of the C-terminal tail-to-tail assembly of the sarcomeric filament protein myomesin.
project.publication.author_listPinotsis N, Lange S, Perriard JC, Svergun DI, Wilmanns M
project.publication.journalEMBO J
project.publication.doi10.1038/sj.emboj.7601944
project.publication.pmid18059477
project.publication.published_date2008 Jan 9
project.statusreleased
project.submitted_date2014-08-01
project.released_date2015-07-07
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDAK5.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDAK5.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAK5_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAK5_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDAK5_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAK5_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDAK5.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.nameMAR 345 Image Plate
experiment.instrument.detector.resolutionnull
experiment.instrument.nameDORIS III, DESY
experiment.instrument.cityHamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL X33
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameMyomesin-1
experiment.sample.molecule[0].short_namenull
experiment.sample.molecule[0].sequenceIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE
experiment.sample.molecule[0].organismHomo sapiens
experiment.sample.molecule[0].uniprot_codeP52179
experiment.sample.molecule[0].uniprot_range_first1225
experiment.sample.molecule[0].uniprot_range_last1443
experiment.sample.molecule[0].oligomerizationdimer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMSLPFYQRCHQHYDLSYRNKDVRSTVSHYQREKKRSAVYTQGSTAYSSRSSAAHRRESEA FRRASASSSQQQASQHALSSEVSRKAASAYDYGSSHGLTDSSLLLDDYSSKLSPKPKRAK HSLLSGEEKENLPSDYMVPIFSGRQKHVSGITDTEEERIKEAAAYIAQRNLLASEEGITT SKQSTASKQTTASKQSTASKQSTASKQSTASRQSTASRQSVVSKQATSALQQEETSEKKS RKVVIREKAERLSLRKTLEETETYHAKLNEDHLLHAPEFIIKPRSHTVWEKENVKLHCSI AGWPEPRVTWYKNQVPINVHANPGKYIIESRYGMHTLEINGCDFEDTAQYRASAMNVKGE LSAYASVVVKRYKGEFDETRFHAGASTMPLSFGVTPYGYASRFEIHFDDKFDVSFGREGE TMSLGCRVVITPEIKHFQPEIQWYRNGVPLSPSKWVQTLWSGERATLTFSHLNKEDEGLY TIRVRMGEYYEQYSAYVFVRDADAEIEGAPAAPLDVKCLEANKDYIIISWKQPAVDGGSP ILGYFIDKCEVGTDSWSQCNDTPVKFARFPVTGLIEGRSYIFRVRAVNKMGIGFPSRVSE PVAALDPAEKARLKSRPSAPWTGQIIVTEEEPSEGIVPGPPTDLSVTEATRSYVVLSWKP PGQRGHEGIMYFVEKCEAGTENWQRVNTELPVKSPRFALFDLAEGKSYCFRVRCSNSAGV GEPSEATEVTVVGDKLDIPKAPGKIIPSRNTDTSVVVSWEESKDAKELVGYYIEASVAGS GKWEPCNNNPVKGSRFTCHGLVTGQSYIFRVRAVNAAGLSEYSQDSEAIEVKAAIGGGVS PDVCPALSDEPGGLTASRGRVHEASPPTFQKDALLGSKPNKPSLPSSSQNLGQTEVSKVS ETVQEELTPPPQKAAPQGKSKSDPLKKKTDRAPPSPPCDITCLESFRDSMVLGWKQPDKI GGAEITGYYVNYREVIDGVPGKWREANVKAVSEEAYKISNLKENMVYQFQVAAMNMAGLG APSAVSECFKCEEWTIAVPGPPHSLKCSEVRKDSLVLQWKPPVHSGRTPVTGYFVDLKEA KAKEDQWRGLNEAAIKNVYLKVRGLKEGVSYVFRVRAINQAGVGKPSDLAGPVVAETRPG TKEVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDL GMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQV RFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL QDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKV ANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSR LKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIR YSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQR LKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCN LKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIPEEEARMAALESLKG GKKAK
experiment.sample.molecule[0].mw22.94
experiment.sample.molecule[0].total_mw45.88
experiment.sample.molecule[0].number_molecules2
experiment.sample.molecule[0].complex_statenull
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name25 mM Tris/HCl 150 mM NaCl
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additiveNaCl 150.000 mM
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.5
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameMyomesin-1 My12-My13
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameEMBL-Hamburg
experiment.contributor[0].affiliation[0].addressNotkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany
experiment.contributor[0].affiliation[0].full_nameEuropean Molecular Biology Laboratory (EMBL) - Hamburg outstation
experiment.contributor[0].affiliation[0].webpagehttp://www.embl-hamburg.de/index.php
experiment.contributor[0].contributor_nameDmitri
experiment.contributor[0].contributor_surnameSvergun
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2005-05-07
experiment.storage_temperaturenull
experiment.cell_temperaturenull
experiment.exposure_timenull
experiment.number_of_framesnull
experiment.wavelengthnull
experiment.sample_detector_distancenull
experiment.concentration_min2.8
experiment.concentration_max7.1
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.103
experiment.s_max4.469
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[0].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDAK5_fit1_model1_img.png
fits[0].models[0].softwareCRYSOL
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modelatomic
fits[0].models[0].software_version
fits[0].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDAK5_fit1_model1.pdb
fits[0].models[0].model_mw45.78
fits[0].models[0].bead_radius0.0
fits[0].models[0].lognull
fits[0].models[0].symmetry
fits[0].models[0].comment
fits[0].models[0].user8
fits[0].fit_unit1/A
fits[0].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDAK5_fit1_fit_img.png
fits[0].softwarenull
fits[0].chi_square_value2.524921
fits[0].p_value0.0
fits[0].fit_residual_plotfit4columns111_fitresiduals_img.png
fits[0].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDAK5_fit1.fit
fits[0].fit_lognull
fits[0].software_versionnull
fits[0].descriptionnull
fits[1].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDAK5_fit2_model1_img.png
fits[1].models[0].softwareCRYSOL
fits[1].models[0].pdb_link[]
fits[1].models[0].model_titlenull
fits[1].models[0].type_of_modelatomic
fits[1].models[0].software_version
fits[1].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDAK5_fit2_model1.pdb
fits[1].models[0].model_mw45.68
fits[1].models[0].bead_radius0.0
fits[1].models[0].lognull
fits[1].models[0].symmetry
fits[1].models[0].comment
fits[1].models[0].user8
fits[1].fit_unit1/A
fits[1].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDAK5_fit2_fit_img.png
fits[1].softwarenull
fits[1].chi_square_value8.2944
fits[1].p_value0.0
fits[1].fit_residual_plotfit4columns112_fitresiduals_img.png
fits[1].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDAK5_fit2.fit
fits[1].fit_lognull
fits[1].software_versionnull
fits[1].descriptionnull
fits[2].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDAK5_fit3_model1_img.png
fits[2].models[0].softwareCRYSOL
fits[2].models[0].pdb_link[]
fits[2].models[0].model_titlenull
fits[2].models[0].type_of_modelatomic
fits[2].models[0].software_version
fits[2].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDAK5_fit3_model1.pdb
fits[2].models[0].model_mw45.77
fits[2].models[0].bead_radius0.0
fits[2].models[0].lognull
fits[2].models[0].symmetry
fits[2].models[0].comment
fits[2].models[0].user8
fits[2].fit_unit1/A
fits[2].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDAK5_fit3_fit_img.png
fits[2].softwarenull
fits[2].chi_square_value64.416676
fits[2].p_value0.0
fits[2].fit_residual_plotfit4columns113_fitresiduals_img.png
fits[2].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDAK5_fit3.fit
fits[2].fit_lognull
fits[2].software_versionnull
fits[2].descriptionnull
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionGNOM
i0_calibration_standardBSA
descriptionUse of SAXS to discriminate between different crystallographic dimers of the C-terminal construct of myomesin-1 containing two IG-like domains.
experiment_descriptionnull
tags[0]X33
intensity_unitnull
experimental_mw45.87
experimental_mw_errornull
guinier_i0_mw47.0
guinier_i0_mw_errornull
porod_mwnull
porod_mw_errornull
pddf_i010070.0
pddf_i0_errornull
guinier_i010070.0
guinier_i0_errornull
pddf_rg4.1
pddf_rg_errornull
guinier_rg4.0
guinier_rg_errornull
pddf_dmax14.5
pddf_dmax_errornull
porod_volume56.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_firstnull
guinier_point_lastnull
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDAK5_datloglog_img.png
symmetrynull
last_modified2023-05-25T11:22:16.556436+02:00
bragg_peak[]
manifest.json:36 field values
Field pathRaw value
codeSASDAK5
statussuccess
started_at2026-08-11T14:49:26.597797+00:00
finished_at2026-08-11T14:49:36.542594+00:00
source_last_modified2023-05-25T11:22:16.556436+02:00
files[0].statusdownloaded
files[0].urlhttps://www.sasbdb.org/rest-api/entry/summary/SASDAK5/
files[0].path/data/saxsdb/sasbdb/entries/k5/sasdak5/source/summary.json
files[0].size10361
files[0].sha2567615f4893c9711a6acc577118ad23020ba9e7140c34722980abdcb27fbee6d7e
files[1].statusdownloaded
files[1].urlhttps://www.sasbdb.org/media/intensities_files/SASDAK5.dat
files[1].path/data/saxsdb/sasbdb/entries/k5/sasdak5/source/SASDAK5.dat
files[1].size45056
files[1].sha25623796c3558b8f33e7800f8342fccd66643c3c3e92f7e63b8281b36f8dbc7b550
files[1].rolecurve
files[2].statusdownloaded
files[2].urlhttps://www.sasbdb.org/media/p_of_R_files/SASDAK5.out
files[2].path/data/saxsdb/sasbdb/entries/k5/sasdak5/source/SASDAK5.out
files[2].size39366
files[2].sha2567e6d9f4e63a21e4bfe5526e80991402b274b2ba992d42c7513bdc7aa4d80713f
files[2].rolepddf
files[3].statusdownloaded
files[3].urlhttps://www.sasbdb.org/media/sascif/sascif_files/SASDAK5.sascif
files[3].path/data/saxsdb/sasbdb/entries/k5/sasdak5/source/SASDAK5.sascif
files[3].size1210891
files[3].sha2564c65bd64c141b301ca9e18ce338c26b01534d9a3848b54ae73394b4b45767317
files[3].rolesascif
files[4].statusdownloaded
files[4].urlhttps://www.sasbdb.org/media/zip_directories/SASDAK5.zip
files[4].path/data/saxsdb/sasbdb/entries/k5/sasdak5/source/SASDAK5.zip
files[4].size270495
files[4].sha2565acadfebc827481d1cacd78162aadc9ea237db56671f7c8ac446ea230b697377
files[4].rolefull_entry_zip
files[4].zip_member_count8
files[4].zip_validationcentral_directory_readable
View the complete summary.json source
{
  "code": "SASDAK5",
  "status": "Published",
  "type_of_curve": "Merged",
  "angular_unit": "1/nm",
  "project": {
    "title": "Molecular basis of the C-terminal tail-to-tail assembly of the sarcomeric filament protein myomesin.",
    "publication": {
      "title": "Molecular basis of the C-terminal tail-to-tail assembly of the sarcomeric filament protein myomesin.",
      "author_list": "Pinotsis N, Lange S, Perriard JC, Svergun DI, Wilmanns M",
      "journal": "EMBO J",
      "doi": "10.1038/sj.emboj.7601944",
      "pmid": "18059477",
      "published_date": "2008 Jan 9"
    },
    "status": "released",
    "submitted_date": "2014-08-01",
    "released_date": "2015-07-07"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDAK5.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDAK5.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAK5_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAK5_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDAK5_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAK5_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDAK5.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "MAR 345 Image Plate",
        "resolution": null
      },
      "name": "DORIS III, DESY",
      "city": "Hamburg",
      "country": "Germany",
      "beamline_name": "EMBL X33",
      "beam_geometry": null,
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "Myomesin-1",
          "short_name": null,
          "sequence": "IALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE",
          "organism": "Homo sapiens",
          "uniprot_code": "P52179",
          "uniprot_range_first": 1225,
          "uniprot_range_last": 1443,
          "oligomerization": "dimer",
          "molecular_type": "protein",
          "uniprot_sequence": "MSLPFYQRCHQHYDLSYRNKDVRSTVSHYQREKKRSAVYTQGSTAYSSRSSAAHRRESEA\nFRRASASSSQQQASQHALSSEVSRKAASAYDYGSSHGLTDSSLLLDDYSSKLSPKPKRAK\nHSLLSGEEKENLPSDYMVPIFSGRQKHVSGITDTEEERIKEAAAYIAQRNLLASEEGITT\nSKQSTASKQTTASKQSTASKQSTASKQSTASRQSTASRQSVVSKQATSALQQEETSEKKS\nRKVVIREKAERLSLRKTLEETETYHAKLNEDHLLHAPEFIIKPRSHTVWEKENVKLHCSI\nAGWPEPRVTWYKNQVPINVHANPGKYIIESRYGMHTLEINGCDFEDTAQYRASAMNVKGE\nLSAYASVVVKRYKGEFDETRFHAGASTMPLSFGVTPYGYASRFEIHFDDKFDVSFGREGE\nTMSLGCRVVITPEIKHFQPEIQWYRNGVPLSPSKWVQTLWSGERATLTFSHLNKEDEGLY\nTIRVRMGEYYEQYSAYVFVRDADAEIEGAPAAPLDVKCLEANKDYIIISWKQPAVDGGSP\nILGYFIDKCEVGTDSWSQCNDTPVKFARFPVTGLIEGRSYIFRVRAVNKMGIGFPSRVSE\nPVAALDPAEKARLKSRPSAPWTGQIIVTEEEPSEGIVPGPPTDLSVTEATRSYVVLSWKP\nPGQRGHEGIMYFVEKCEAGTENWQRVNTELPVKSPRFALFDLAEGKSYCFRVRCSNSAGV\nGEPSEATEVTVVGDKLDIPKAPGKIIPSRNTDTSVVVSWEESKDAKELVGYYIEASVAGS\nGKWEPCNNNPVKGSRFTCHGLVTGQSYIFRVRAVNAAGLSEYSQDSEAIEVKAAIGGGVS\nPDVCPALSDEPGGLTASRGRVHEASPPTFQKDALLGSKPNKPSLPSSSQNLGQTEVSKVS\nETVQEELTPPPQKAAPQGKSKSDPLKKKTDRAPPSPPCDITCLESFRDSMVLGWKQPDKI\nGGAEITGYYVNYREVIDGVPGKWREANVKAVSEEAYKISNLKENMVYQFQVAAMNMAGLG\nAPSAVSECFKCEEWTIAVPGPPHSLKCSEVRKDSLVLQWKPPVHSGRTPVTGYFVDLKEA\nKAKEDQWRGLNEAAIKNVYLKVRGLKEGVSYVFRVRAINQAGVGKPSDLAGPVVAETRPG\nTKEVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDL\nGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQV\nRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL\nQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKV\nANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSR\nLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIR\nYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQR\nLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCN\nLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIPEEEARMAALESLKG\nGKKAK",
          "mw": 22.94,
          "total_mw": 45.88,
          "number_molecules": 2,
          "complex_state": null,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": null
        }
      ],
      "buffer": {
        "name": "25 mM Tris/HCl 150 mM NaCl",
        "concentration_unit": null,
        "comment": null,
        "additive": "NaCl 150.000 mM",
        "concentration": null,
        "pka": null,
        "ph": 7.5,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Myomesin-1 My12-My13",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": "EMBL-Hamburg",
            "address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
            "full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
            "webpage": "http://www.embl-hamburg.de/index.php"
          }
        ],
        "contributor_name": "Dmitri",
        "contributor_surname": "Svergun",
        "orcid": null
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2005-05-07",
    "storage_temperature": null,
    "cell_temperature": null,
    "exposure_time": null,
    "number_of_frames": null,
    "wavelength": null,
    "sample_detector_distance": null,
    "concentration_min": 2.8,
    "concentration_max": 7.1,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.103,
    "s_max": 4.469,
    "total_exposure_time": null,
    "seccolumn": null
  },
  "fits": [
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDAK5_fit1_model1_img.png",
          "software": "CRYSOL",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": "",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDAK5_fit1_model1.pdb",
          "model_mw": 45.78,
          "bead_radius": 0.0,
          "log": null,
          "symmetry": "",
          "comment": "",
          "user": 8
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDAK5_fit1_fit_img.png",
      "software": null,
      "chi_square_value": 2.524921,
      "p_value": 0.0,
      "fit_residual_plot": "fit4columns111_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDAK5_fit1.fit",
      "fit_log": null,
      "software_version": null,
      "description": null
    },
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDAK5_fit2_model1_img.png",
          "software": "CRYSOL",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": "",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDAK5_fit2_model1.pdb",
          "model_mw": 45.68,
          "bead_radius": 0.0,
          "log": null,
          "symmetry": "",
          "comment": "",
          "user": 8
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDAK5_fit2_fit_img.png",
      "software": null,
      "chi_square_value": 8.2944,
      "p_value": 0.0,
      "fit_residual_plot": "fit4columns112_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDAK5_fit2.fit",
      "fit_log": null,
      "software_version": null,
      "description": null
    },
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDAK5_fit3_model1_img.png",
          "software": "CRYSOL",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": "",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDAK5_fit3_model1.pdb",
          "model_mw": 45.77,
          "bead_radius": 0.0,
          "log": null,
          "symmetry": "",
          "comment": "",
          "user": 8
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDAK5_fit3_fit_img.png",
      "software": null,
      "chi_square_value": 64.416676,
      "p_value": 0.0,
      "fit_residual_plot": "fit4columns113_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDAK5_fit3.fit",
      "fit_log": null,
      "software_version": null,
      "description": null
    }
  ],
  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": "GNOM",
  "i0_calibration_standard": "BSA",
  "description": "Use of SAXS to discriminate between different crystallographic dimers of the C-terminal construct of myomesin-1 containing two IG-like domains.",
  "experiment_description": null,
  "tags": [
    "X33"
  ],
  "intensity_unit": null,
  "experimental_mw": 45.87,
  "experimental_mw_error": null,
  "guinier_i0_mw": 47.0,
  "guinier_i0_mw_error": null,
  "porod_mw": null,
  "porod_mw_error": null,
  "pddf_i0": 10070.0,
  "pddf_i0_error": null,
  "guinier_i0": 10070.0,
  "guinier_i0_error": null,
  "pddf_rg": 4.1,
  "pddf_rg_error": null,
  "guinier_rg": 4.0,
  "guinier_rg_error": null,
  "pddf_dmax": 14.5,
  "pddf_dmax_error": null,
  "porod_volume": 56.0,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": null,
  "guinier_point_last": null,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDAK5_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2023-05-25T11:22:16.556436+02:00",
  "bragg_peak": []
}
View the complete manifest.json source
{
  "code": "SASDAK5",
  "status": "success",
  "started_at": "2026-08-11T14:49:26.597797+00:00",
  "finished_at": "2026-08-11T14:49:36.542594+00:00",
  "source_last_modified": "2023-05-25T11:22:16.556436+02:00",
  "files": [
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDAK5/",
      "path": "/data/saxsdb/sasbdb/entries/k5/sasdak5/source/summary.json",
      "size": 10361,
      "sha256": "7615f4893c9711a6acc577118ad23020ba9e7140c34722980abdcb27fbee6d7e"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/intensities_files/SASDAK5.dat",
      "path": "/data/saxsdb/sasbdb/entries/k5/sasdak5/source/SASDAK5.dat",
      "size": 45056,
      "sha256": "23796c3558b8f33e7800f8342fccd66643c3c3e92f7e63b8281b36f8dbc7b550",
      "role": "curve"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/p_of_R_files/SASDAK5.out",
      "path": "/data/saxsdb/sasbdb/entries/k5/sasdak5/source/SASDAK5.out",
      "size": 39366,
      "sha256": "7e6d9f4e63a21e4bfe5526e80991402b274b2ba992d42c7513bdc7aa4d80713f",
      "role": "pddf"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDAK5.sascif",
      "path": "/data/saxsdb/sasbdb/entries/k5/sasdak5/source/SASDAK5.sascif",
      "size": 1210891,
      "sha256": "4c65bd64c141b301ca9e18ce338c26b01534d9a3848b54ae73394b4b45767317",
      "role": "sascif"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/zip_directories/SASDAK5.zip",
      "path": "/data/saxsdb/sasbdb/entries/k5/sasdak5/source/SASDAK5.zip",
      "size": 270495,
      "sha256": "5acadfebc827481d1cacd78162aadc9ea237db56671f7c8ac446ea230b697377",
      "role": "full_entry_zip",
      "zip_member_count": 8,
      "zip_validation": "central_directory_readable"
    }
  ]
}