The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.
Every source field is expanded here, including empty values, list members and fields already shown above.
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{
"code": "SASDAM5",
"status": "Published",
"type_of_curve": "Merged",
"angular_unit": "1/nm",
"project": {
"title": "The CD27L and CTP1L endolysins targeting Clostridia contain a built-in trigger and release factor.",
"publication": {
"title": "The CD27L and CTP1L endolysins targeting Clostridia contain a built-in trigger and release factor.",
"author_list": "Dunne M, Mertens HD, Garefalaki V, Jeffries CM, Thompson A, Lemke EA, Svergun DI, Mayer MJ, Narbad A, Meijers R",
"journal": "PLoS Pathog",
"doi": "10.1371/journal.ppat.1004228",
"pmid": "25058163",
"published_date": "2014 Jul"
},
"status": "released",
"submitted_date": null,
"released_date": "2014-07-24"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDAM5.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDAM5.dat",
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"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAM5_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDAM5_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAM5_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDAM5.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus 2M",
"resolution": null
},
"name": "PETRA III",
"city": "DESY; Hamburg",
"country": "Germany",
"beamline_name": "EMBL P12",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Clostridium difficile bacteriophage 27 endolysin C238R mutant",
"short_name": "CD27L(C238R)",
"sequence": "MGSSHHHHHHSSGLVPRGSHMKICITVGHSILKSGACTSADGVVNEYQYNKSLAPVLADTFRKEGHKVDVIIsPEKQFKTKNEEKSYKIPRVNSGGYDLL\r\nIELHLNASNGQGKGSEVLYYSNKGLEYATRICDKLGTVFKNRGAKLDKRLYILNSSKPTAVLIESFFCDNKEDYDKAKKLGHEGIAKLIVEGVLNKNINN\r\nEGVKQMYKHTIVYDGEVDKISATVVGWGYNDGKILICDIKDYVPGQTQNLYVVGGGAREKISSITKEKFIMIKGNDRFDTLYKALDFIN",
"organism": "Clostridioides difficile",
"uniprot_code": null,
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "dimer",
"molecular_type": "protein",
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"complex_state": null,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "20 mM HEPES 500 mM NaCl",
"concentration_unit": null,
"comment": null,
"additive": "NaCl 500.000 mM",
"concentration": null,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "Clostridium difficile bacteriophage 27 endolysin dimer C238R mutant, CD27L-C238R",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "EMBL-Hamburg",
"address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
"full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
"webpage": "http://www.embl-hamburg.de/index.php"
}
],
"contributor_name": "Haydyn",
"contributor_surname": "Mertens",
"orcid": null
}
],
"concentration_method": "A280",
"concentration_unit": null,
"date": "2013-06-21",
"storage_temperature": 10.0,
"cell_temperature": 10.0,
"exposure_time": 0.05,
"number_of_frames": 20,
"wavelength": 0.12,
"sample_detector_distance": 3.1,
"concentration_min": 1.0,
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"sample_volume": null,
"flow_rate": null,
"s_min": 0.1,
"s_max": 4.583,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
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"software": "DAMMIF",
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"type_of_model": "dummy",
"software_version": "0.9",
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"bead_radius": 3.1,
"log": "https://www.sasbdb.org/media/log_files/cd27l_c238r_dammif_6.log",
"symmetry": "P2",
"comment": "",
"user": 12
}
],
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},
{
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}
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},
{
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"symmetry": "",
"comment": "Only terminal residues added with EOM to core based on PDB ID: 4CU5 and 3QAY",
"user": 12
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDAM5_fit3_model100_fit_img.png",
"software": "CRYSOL",
"chi_square_value": 10.847,
"p_value": 0.0,
"fit_residual_plot": "SASDAM5_fit3_model100_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDAM5_fit3_model100.fit",
"fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/SASDAM5_fit3_model100.log",
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}
],
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"pddf_software": "ATSAS GNOM",
"pddf_software_version": null,
"i0_calibration_standard": "BSA",
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": null,
"experimental_mw": 63.8,
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"pddf_i0": 3653.0,
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"guinier_i0": 3664.0,
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"pddf_rg": 4.3,
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"pddf_dmax": 14.7,
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"estimated_volume": null,
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"guinier_point_first": 1,
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"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDAM5_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-06-21T07:56:39.492710+02:00",
"bragg_peak": []
}
