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{
"code": "SASDAN5",
"status": "Published",
"type_of_curve": "Merged",
"angular_unit": "1/nm",
"project": {
"title": "Dynamics in a pure encounter complex of two proteins studied by solution scattering and paramagnetic NMR spectroscopy.",
"publication": {
"title": "Dynamics in a pure encounter complex of two proteins studied by solution scattering and paramagnetic NMR spectroscopy.",
"author_list": "Xu X, Reinle W, Hannemann F, Konarev PV, Svergun DI, Bernhardt R, Ubbink M",
"journal": "J Am Chem Soc",
"doi": "10.1021/ja7101357",
"pmid": "18439013",
"published_date": "2008 May 21"
},
"status": "released",
"submitted_date": null,
"released_date": "2015-07-07"
},
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"name": "MAR 345 Image Plate",
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},
"name": "DORIS III, DESY",
"city": "Hamburg",
"country": "Germany",
"beamline_name": "EMBL X33",
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"type_of_source": "X-ray synchrotron",
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"long_name": "Cytochrome C",
"short_name": "Cyt_C",
"sequence": "TEFKAGSAKKGATLFKTRCLQCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKATE",
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{
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],
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"ph": 7.4,
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},
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"name": "Cross-linked complex CytC_Adr",
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},
"contributor": [
{
"affiliation": [
{
"short_name": "EMBL-Hamburg",
"address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
"full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
"webpage": "http://www.embl-hamburg.de/index.php"
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"date": "2006-06-15",
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"last_modified": "2023-05-25T11:22:16.556436+02:00",
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}