full_entry_zip:来源记录与 ZIP 内部目录(9 项)
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}查看完整 summary.json 原文
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"title": "Crystal structures of substrate-bound chitinase from the psychrophilic bacterium Moritella marina and its structure in solution.",
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"title": "Crystal structures of substrate-bound chitinase from the psychrophilic bacterium Moritella marina and its structure in solution.",
"author_list": "Malecki PH, Vorgias CE, Petoukhov MV, Svergun DI, Rypniewski W",
"journal": "Acta Crystallogr D Biol Crystallogr",
"doi": "10.1107/S1399004713032264",
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"published_date": "2014 Mar"
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查看完整 manifest.json 原文
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