SASDAQ4

6:3 complex of GAD:CaM

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2023-05-25T11:22:16.556436+02:00

1. 样品、组分与实验条件 Sample & Experiment

样品 1 · 6:3 complex of GAD:CaM

浓度— – — 缓冲液 / pH50 mM HEPES 50 mM KCl / 7.5
Experimental temperature设备 / 束线DORIS III, DESY / EMBL X33
波长— nm曝光— s × —

分子组分

组分类型 / OrganismUniProt 与Construct寡聚状态Molecular weight
Calmodulin
查看序列
>SP|P62158|CALM_HUMANCALMODULINOS=HOMOSAPIENSGN=CALM1PE=1SV=2MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK
proteinHomo sapiensP62158—–—monomer分子数 116.84 kDa
Glutamate decarboxylase
查看序列
>SP|Q07346|DCE_PETHYGLUTAMATEDECARBOXYLASEOS=PETUNIAHYBRIDAGN=GADPE=1SV=1MVLSKTVSQSDVSIHSTFASRYVRTSLPRFKMPDNSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMDSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEDGETAVGVGTVGSSEAIMLAGLAFKRKWQNKMKAQGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKDDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCQENASVLREGLEKTGRFNIISKEIGVPLVAFSLKDNRQHNEFEISETLRRFGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLAVAEEQAAANGSEVHKKTDSEVQLEMITAWKKFVEEKKKKTNRVC
proteinPetunia x hybridaQ07346—–—hexamer分子数 656.73 kDa

实验曲线

曲线点数 / 列q range误差质量负强度点来源文件
11982[3]0.1557–4.483 1/nm含误差列缺失 0590sasbdb/entries/q4/sasdaq4/source/SASDAQ4.dat

2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)23.0nm
i0Guinier87600.0
mwExperimental400.0kDa
porod_volumePorod630.0nm³
rgGuinier5.85nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

3. 来源拟合与模型 Source Fits & Models

4. 来源文件索引 Source Files

5. 实验说明与论文 Experiment & Publication

6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;Not declared的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称50 mM HEPES 50 mM KCl缓冲液浓度50.0 mM
pH7.5添加剂KCl 50.000 mM
缓冲液说明4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid
纯度测定方法消光系数
吸收值散射对比度
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2004-11-09储存 / 测量温度— / —
曝光时间帧数
波长样品-探测器距离
光源X-ray synchrotron探测器MAR 345 Image Plate
机构 / 束线DORIS III, DESY / EMBL X33 · Hamburg, Germany
q range0.156 – 4.483样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可Download文件

类别文件状态大小校验值Download与查看
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full_entry_zipsasbdb/entries/q4/sasdaq4/source/SASDAQ4.zipdownloaded458463ce3e00c6762e4d26a9d759e982d714e59ee63ed4fee6746627e406b144424f3dDownload查看原文件源站
pddfsasbdb/entries/q4/sasdaq4/source/SASDAQ4.outdownloaded274380f4f8c89fb5b6c3a9a8ad09afb56a899a64a058acb28f5c28e1db178254a9fd8Download查看原文件源站
sascifsasbdb/entries/q4/sasdaq4/source/SASDAQ4.sascifdownloaded2762181321b8254dfaf1cf59a589dd33f8f19cead0184b4492116777cc89876d249fe8bDownload查看原文件源站
summarysasbdb/entries/q4/sasdaq4/source/summary.jsondownloaded83413d5933c6a306db3df276ed7c0234bb1f2b2b4337db903b68e6f7edabae60e0b1Download查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(4 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:173 个字段值
字段路径原始值
codeSASDAQ4
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleA common structural basis for pH- and calmodulin-mediated regulation in plant glutamate decarboxylase.
project.publication.titleA common structural basis for pH- and calmodulin-mediated regulation in plant glutamate decarboxylase.
project.publication.author_listGut H, Dominici P, Pilati S, Astegno A, Petoukhov MV, Svergun DI, Grütter MG, Capitani G
project.publication.journalJ Mol Biol
project.publication.doi10.1016/j.jmb.2009.06.080
project.publication.pmid19580813
project.publication.published_date2009 Sep 18
project.statusreleased
project.submitted_datenull
project.released_date2015-07-07
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDAQ4.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDAQ4.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAQ4_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAQ4_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDAQ4_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAQ4_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDAQ4.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.nameMAR 345 Image Plate
experiment.instrument.detector.resolutionnull
experiment.instrument.nameDORIS III, DESY
experiment.instrument.cityHamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL X33
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameCalmodulin
experiment.sample.molecule[0].short_namenull
experiment.sample.molecule[0].sequence>sp|P62158|CALM_HUMAN Calmodulin OS=Homo sapiens GN=CALM1 PE=1 SV=2 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE EVDEMIREADIDGDGQVNYEEFVQMMTAK
experiment.sample.molecule[0].organismHomo sapiens
experiment.sample.molecule[0].uniprot_codeP62158
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequencenull
experiment.sample.molecule[0].mw16.84
experiment.sample.molecule[0].total_mw16.84
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_statenull
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.molecule[1].long_nameGlutamate decarboxylase
experiment.sample.molecule[1].short_nameGAD
experiment.sample.molecule[1].sequence>sp|Q07346|DCE_PETHY Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1 MVLSKTVSQSDVSIHSTFASRYVRTSLPRFKMPDNSIPKEAAYQIINDELMLDGNPRLNL ASFVTTWMEPECDKLMMDSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEDGETAVG VGTVGSSEAIMLAGLAFKRKWQNKMKAQGKPCDKPNIVTGANVQVCWEKFARYFEVELKE VKLSEGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKETGWDTP IHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKDDLPDEL IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCQENASVLREGLEK TGRFNIISKEIGVPLVAFSLKDNRQHNEFEISETLRRFGWIVPAYTMPPNAQHITVLRVV IREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLAVAEEQAAANGSEVHKKTDSEVQLE MITAWKKFVEEKKKKTNRVC
experiment.sample.molecule[1].organismPetunia x hybrida
experiment.sample.molecule[1].uniprot_codeQ07346
experiment.sample.molecule[1].uniprot_range_firstnull
experiment.sample.molecule[1].uniprot_range_lastnull
experiment.sample.molecule[1].oligomerizationhexamer
experiment.sample.molecule[1].molecular_typeprotein
experiment.sample.molecule[1].uniprot_sequenceMVLSKTVSQSDVSIHSTFASRYVRTSLPRFKMPDNSIPKEAAYQIINDELMLDGNPRLNL ASFVTTWMEPECDKLMMDSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEDGETAVG VGTVGSSEAIMLAGLAFKRKWQNKMKAQGKPCDKPNIVTGANVQVCWEKFARYFEVELKE VKLSEGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLVEKNKETGWDTP IHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKDDLPDEL IFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCQENASVLREGLEK TGRFNIISKEIGVPLVAFSLKDNRQHNEFEISETLRRFGWIVPAYTMPPNAQHITVLRVV IREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLAVAEEQAAANGSEVHKKTDSEVQLE MITAWKKFVEEKKKKTNRVC
experiment.sample.molecule[1].mw56.73
experiment.sample.molecule[1].total_mw340.38
experiment.sample.molecule[1].number_molecules6
experiment.sample.molecule[1].complex_statenull
experiment.sample.molecule[1].deuterationnull
experiment.sample.molecule[1].molecule_sourcebiological
experiment.sample.molecule[1].molecule_descriptionnull
experiment.sample.buffer.name50 mM HEPES 50 mM KCl
experiment.sample.buffer.concentration_unitmM
experiment.sample.buffer.comment4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid
experiment.sample.buffer.additiveKCl 50.000 mM
experiment.sample.buffer.concentration50.0
experiment.sample.buffer.pka7.0
experiment.sample.buffer.ph7.5
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.name6:3 complex of GAD:CaM
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameEMBL-Hamburg
experiment.contributor[0].affiliation[0].addressNotkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany
experiment.contributor[0].affiliation[0].full_nameEuropean Molecular Biology Laboratory (EMBL) - Hamburg outstation
experiment.contributor[0].affiliation[0].webpagehttp://www.embl-hamburg.de/index.php
experiment.contributor[0].contributor_nameMaxim
experiment.contributor[0].contributor_surnamePetoukhov
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2004-11-09
experiment.storage_temperaturenull
experiment.cell_temperaturenull
experiment.exposure_timenull
experiment.number_of_framesnull
experiment.wavelengthnull
experiment.sample_detector_distancenull
experiment.concentration_minnull
experiment.concentration_maxnull
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.156
experiment.s_max4.483
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[0].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDAQ4_fit1_model1_img.png
fits[0].models[0].softwareBUNCH
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modelmix
fits[0].models[0].software_version
fits[0].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDAQ4_fit1_model1.pdb
fits[0].models[0].model_mw385.6
fits[0].models[0].bead_radius1.9
fits[0].models[0].lognull
fits[0].models[0].symmetryP6/P1
fits[0].models[0].comment
fits[0].models[0].user102
fits[0].fit_unit1/A
fits[0].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDAQ4_fit1_fit_img.png
fits[0].softwarenull
fits[0].chi_square_value6.466
fits[0].p_value0.0
fits[0].fit_residual_plotSASDAQ4_fit1_fitresiduals_img.png
fits[0].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDAQ4_fit1.fit
fits[0].fit_lognull
fits[0].software_versionnull
fits[0].descriptionnull
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionnull
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[0]X33
intensity_unitnull
experimental_mw400.0
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mwnull
porod_mw_errornull
pddf_i0null
pddf_i0_errornull
guinier_i087600.0
guinier_i0_errornull
pddf_rgnull
pddf_rg_errornull
guinier_rg5.85
guinier_rg_errornull
pddf_dmax23.0
pddf_dmax_errornull
porod_volume630.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first1
guinier_point_last29
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDAQ4_datloglog_img.png
symmetrynull
last_modified2023-05-25T11:22:16.556436+02:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDAQ4
statussuccess
started_at2026-08-11T14:28:34.827812+00:00
finished_at2026-08-11T14:28:46.667005+00:00
source_last_modified2023-05-25T11:22:16.556436+02:00
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查看完整 summary.json 原文
{
  "code": "SASDAQ4",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "A common structural basis for pH- and calmodulin-mediated regulation in plant glutamate decarboxylase.",
    "publication": {
      "title": "A common structural basis for pH- and calmodulin-mediated regulation in plant glutamate decarboxylase.",
      "author_list": "Gut H, Dominici P, Pilati S, Astegno A, Petoukhov MV, Svergun DI, Grütter MG, Capitani G",
      "journal": "J Mol Biol",
      "doi": "10.1016/j.jmb.2009.06.080",
      "pmid": "19580813",
      "published_date": "2009 Sep 18"
    },
    "status": "released",
    "submitted_date": null,
    "released_date": "2015-07-07"
  },
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  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDAQ4.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAQ4_dat_img.png",
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  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDAQ4_pofr_img.png",
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  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDAQ4.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "MAR 345 Image Plate",
        "resolution": null
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查看完整 manifest.json 原文
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