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SASDAQ5

Lumazine Synthase

Data type: SASBDB experimental data Status: Published Curve type: Single concentration Last updated: 2023-05-25T11:22:16.556436+02:00
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1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · Lumazine Synthase

Concentration— – — Buffer / pHBorate buffer / 7.0
Experimental temperature15.0 Facility / beamlineDORIS III, DESY / EMBL X33
Wavelength— nmExposure120.0 s × 2

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
Lumazine Synthase
View sequence
MNIIQGNLVGTGLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERAGTKAGNKGVDCAVSAIEMANLNRSFE
proteinBacillus subtilis——–—otherMolecule count —16.29 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
11205[3]0.1056–3.328 1/nmHas uncertainty columnMissing 0393sasbdb/entries/q5/sasdaq5/source/SASDAQ5.dat
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2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)15.5—nm
i0Guinier581600.0——
i0P(r)581400.0——
mwExperimental960.0—kDa
porod_volumePorod1450.0—nm³
rgGuinier6.22—nm
rgP(r)6.18—nm

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

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3. Source Fits and Models Source Fits & Models

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4. Source File Index Source Files

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5. Experiment Description and Publication Experiment & Publication

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6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer nameBorate bufferBuffer concentration—
pH7.0Additives—
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2004-11-25Storage / measurement temperature15.0 / 15.0
Exposure time120.0Frames2
Wavelength—Sample-to-detector distance—
SourceX-ray synchrotronDetectorMAR 345 Image Plate
Facility / beamlineDORIS III, DESY / EMBL X33 · Hamburg, Germany
q range0.106 – 3.328Sample volume / flow rate— / —

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

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All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json：156 field values
Field pathRaw value
codeSASDAQ5
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleMultiple assembly states of lumazine synthase: a model relating catalytic function and molecular assembly.
project.publication.titleMultiple assembly states of lumazine synthase: a model relating catalytic function and molecular assembly.
project.publication.author_listZhang X, Konarev PV, Petoukhov MV, Svergun DI, Xing L, Cheng RH, Haase I, Fischer M, Bacher A, Ladenstein R, Meining W
project.publication.journalJ Mol Biol
project.publication.doi10.1016/j.jmb.2006.07.037
project.publication.pmid16935304
project.publication.published_date2006 Sep 29
project.statusreleased
project.submitted_datenull
project.released_date2015-07-07
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experiment.instrument.detector.typenull
experiment.instrument.detector.nameMAR 345 Image Plate
experiment.instrument.detector.resolutionnull
experiment.instrument.nameDORIS III, DESY
experiment.instrument.cityHamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL X33
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
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experiment.sample.molecule[0].long_nameLumazine Synthase
experiment.sample.molecule[0].short_nameLumazine Synthase
experiment.sample.molecule[0].sequenceMNIIQGNLVGTGLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGT VIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERAGTKAGNKGVDCAVSAIEMANLNRSFE
experiment.sample.molecule[0].organismBacillus subtilis
experiment.sample.molecule[0].uniprot_codenull
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationother
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequencenull
experiment.sample.molecule[0].mw16.29
experiment.sample.molecule[0].total_mw960.0
experiment.sample.molecule[0].number_molecules0
experiment.sample.molecule[0].complex_statenull
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.nameBorate buffer
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.0
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameLumazine Synthase
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameEMBL-Hamburg
experiment.contributor[0].affiliation[0].addressNotkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany
experiment.contributor[0].affiliation[0].full_nameEuropean Molecular Biology Laboratory (EMBL) - Hamburg outstation
experiment.contributor[0].affiliation[0].webpagehttp://www.embl-hamburg.de/index.php
experiment.contributor[0].contributor_namePetr
experiment.contributor[0].contributor_surnameKonarev
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2004-11-25
experiment.storage_temperature15.0
experiment.cell_temperature15.0
experiment.exposure_time120.0
experiment.number_of_frames2
experiment.wavelengthnull
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i0_calibration_standard_datanull
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symmetrynull
last_modified2023-05-25T11:22:16.556436+02:00
bragg_peak[]
manifest.json：36 field values
Field pathRaw value
codeSASDAQ5
statussuccess
started_at2026-08-11T14:53:06.694966+00:00
finished_at2026-08-11T14:53:15.487328+00:00
source_last_modified2023-05-25T11:22:16.556436+02:00
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View the complete summary.json source
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  "status": "Published",
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  "angular_unit": "1/nm",
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    "title": "Multiple assembly states of lumazine synthase: a model relating catalytic function and molecular assembly.",
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      "title": "Multiple assembly states of lumazine synthase: a model relating catalytic function and molecular assembly.",
      "author_list": "Zhang X, Konarev PV, Petoukhov MV, Svergun DI, Xing L, Cheng RH, Haase I, Fischer M, Bacher A, Ladenstein R, Meining W",
      "journal": "J Mol Biol",
      "doi": "10.1016/j.jmb.2006.07.037",
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View the complete manifest.json source
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