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SASDAS3

Fila16-17

Data type: SASBDB experimental data Status: Published Curve type: Single concentration Last updated: 2023-05-25T11:22:16.556436+02:00
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1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · Fila16-17

Concentration— – — Buffer / pH100 mM NaCl 10 mM dithiothreitol 20 mM Tris / 8.0
Experimental temperature10.0 Facility / beamlineDORIS III, DESY / EMBL X33
Wavelength— nmExposure— s × —

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
immunoglobulin- like filamin two-domain fragment 16-17
View sequence
GRVKESITRRRRAPSVANVGSHCDLSIQDMTAQVTSPSGKTHEAECIRFVPAEMGTHTVSVKYKGQHVPGSPFQFTVGPLGEGGAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNEEHIPDSPFVVPVASP
proteinEscherichia coli——–—monomerMolecule count 118.7 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
11470[3]0.135392–3.5391 1/nmHas uncertainty columnMissing 018sasbdb/entries/s3/sasdas3/source/SASDAS3.dat
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2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)6.0—nm
estimated_volumeReported32.0—nm³
i0Guinier41.5——
i0P(r)41.6——
mwExperimental22.0—kDa
porod_volumePorod33.0—nm³
rgGuinier1.92—nm
rgP(r)1.93—nm

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

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3. Source Fits and Models Source Fits & Models

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4. Source File Index Source Files

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5. Experiment Description and Publication Experiment & Publication

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6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name100 mM NaCl 10 mM dithiothreitol 20 mM TrisBuffer concentration—
pH8.0Additives—
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2007-06-18Storage / measurement temperature10.0 / 10.0
Exposure time—Frames—
Wavelength—Sample-to-detector distance—
SourceX-ray synchrotronDetectorMAR 345 Image Plate
Facility / beamlineDORIS III, DESY / EMBL X33 · Hamburg, Germany
q range0.135 – 3.539Sample volume / flow rate— / —

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

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pddf：source record
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All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json：156 field values
Field pathRaw value
codeSASDAS3
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleAtomic structures of two novel immunoglobulin-like domain pairs in the actin cross-linking protein filamin.
project.publication.titleAtomic structures of two novel immunoglobulin-like domain pairs in the actin cross-linking protein filamin.
project.publication.author_listHeikkinen OK, Ruskamo S, Konarev PV, Svergun DI, Iivanainen T, Heikkinen SM, Permi P, Koskela H, Kilpeläinen I, Ylänne J
project.publication.journalJ Biol Chem
project.publication.doi10.1074/jbc.M109.019661
project.publication.pmid19622754
project.publication.published_date2009 Sep 11
project.statusreleased
project.submitted_datenull
project.released_date2015-07-07
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experiment.instrument.detector.typenull
experiment.instrument.detector.nameMAR 345 Image Plate
experiment.instrument.detector.resolutionnull
experiment.instrument.nameDORIS III, DESY
experiment.instrument.cityHamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL X33
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
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experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
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experiment.sample.molecule[0].long_nameimmunoglobulin- like filamin two-domain fragment 16-17
experiment.sample.molecule[0].short_nameFila16-17
experiment.sample.molecule[0].sequenceGRVKESITRRRRAPSVANVGSHCDLSIQDMTAQVTSPSGKTHEAECIRFVPAEMGTHTVSVKYKGQHVPGSPFQFTVGPL GEGGAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNE EHIPDSPFVVPVASP
experiment.sample.molecule[0].organismEscherichia coli
experiment.sample.molecule[0].uniprot_codenull
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequencenull
experiment.sample.molecule[0].mw18.7
experiment.sample.molecule[0].total_mw18.7
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_statenull
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name100 mM NaCl 10 mM dithiothreitol 20 mM Tris
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph8.0
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameFila16-17
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameEMBL-Hamburg
experiment.contributor[0].affiliation[0].addressNotkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany
experiment.contributor[0].affiliation[0].full_nameEuropean Molecular Biology Laboratory (EMBL) - Hamburg outstation
experiment.contributor[0].affiliation[0].webpagehttp://www.embl-hamburg.de/index.php
experiment.contributor[0].contributor_namePetr
experiment.contributor[0].contributor_surnameKonarev
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2007-06-18
experiment.storage_temperature10.0
experiment.cell_temperature10.0
experiment.exposure_timenull
experiment.number_of_framesnull
experiment.wavelengthnull
experiment.sample_detector_distancenull
experiment.concentration_minnull
experiment.concentration_maxnull
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.135
experiment.s_max3.539
experiment.total_exposure_timenull
experiment.seccolumnnull
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fits[0].chi_square_value2.8561
fits[0].p_value0.001807
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pddf_software_versionGNOM
i0_calibration_standardBSA
descriptionnull
experiment_descriptionnull
tags[0]X33
intensity_unitnull
experimental_mw22.0
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mwnull
porod_mw_errornull
pddf_i041.6
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guinier_i041.5
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pddf_dmax_errornull
porod_volume33.0
porod_volume_errornull
estimated_volume32.0
estimated_volume_errornull
guinier_point_firstnull
guinier_point_lastnull
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDAS3_datloglog_img.png
symmetrynull
last_modified2023-05-25T11:22:16.556436+02:00
bragg_peak[]
manifest.json：36 field values
Field pathRaw value
codeSASDAS3
statussuccess
started_at2026-08-11T14:06:23.309964+00:00
finished_at2026-08-11T14:06:32.592947+00:00
source_last_modified2023-05-25T11:22:16.556436+02:00
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View the complete summary.json source
{
  "code": "SASDAS3",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "Atomic structures of two novel immunoglobulin-like domain pairs in the actin cross-linking protein filamin.",
    "publication": {
      "title": "Atomic structures of two novel immunoglobulin-like domain pairs in the actin cross-linking protein filamin.",
      "author_list": "Heikkinen OK, Ruskamo S, Konarev PV, Svergun DI, Iivanainen T, Heikkinen SM, Permi P, Koskela H, Kilpeläinen I, Ylänne J",
      "journal": "J Biol Chem",
      "doi": "10.1074/jbc.M109.019661",
      "pmid": "19622754",
      "published_date": "2009 Sep 11"
    },
    "status": "released",
    "submitted_date": null,
    "released_date": "2015-07-07"
  },
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View the complete manifest.json source
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