SASDAU7

Aptamer AIR-3 FdU

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2023-06-21T07:56:39.492710+02:00

1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Aptamer AIR-3 FdU

浓度— – 0.2 mg/ml缓冲液 / pHwater / 7.5
Experimental temperature10.0 设备 / 束线PETRA III / EMBL P12
波长0.12 nm曝光0.05 s × 20

分子组分

组分类型 / OrganismUniProt 与Construct寡聚状态Molecular weight
AIR3-FdU
查看序列
GGAAGAAAGAGGUCUGAGACAUUCUCUUAUAGGGGAGGCUGUGGUGAGGGAAUAUUAAGAGAAUUAACGGUCUAGUUCACCUCGACUUCUGGAGUUGACGUUGCUU
RNA—–—dimer分子数 234.39 kDa

实验曲线

曲线点数 / 列q range误差质量负强度点来源文件
11694[3]0.0290642–4.48844 1/nm含误差列缺失 0194sasbdb/entries/u7/sasdau7/source/SASDAU7.dat

2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)16.0nm
i0Guinier17500.0
i0P(r)16950.0
mwExperimental67.0kDa
mwPorod67.0kDa
porod_volumePorod67.0nm³
rgGuinier5.0nm
rgP(r)5.0nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

3. 来源拟合与模型 Source Fits & Models

4. 来源文件索引 Source Files

5. 实验说明与论文 Experiment & Publication

6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;Not declared的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称water缓冲液浓度
pH7.5添加剂
缓冲液说明
纯度测定方法消光系数
吸收值散射对比度
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2013-10-31储存 / 测量温度10.0 / 10.0
曝光时间0.05帧数20
波长0.12样品-探测器距离3.1
光源X-ray synchrotron探测器Pilatus 2M
机构 / 束线PETRA III / EMBL P12 · DESY; Hamburg, Germany
q range0.029 – 4.488样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可Download文件

类别文件状态大小校验值Download与查看
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curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(4 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:156 个字段值
字段路径原始值
codeSASDAU7
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleStructure and target interaction of a G-quadruplex RNA-aptamer.
project.publication.titleStructure and target interaction of a G-quadruplex RNA-aptamer.
project.publication.author_listSzameit K, Berg K, Kruspe S, Valentini E, Magbanua E, Kwiatkowski M, Chauvot de Beauchêne I, Krichel B, Schamoni K, Uetrecht C, Svergun DI, Schlüter H, Zacharias M, Hahn U
project.publication.journalRNA Biol
project.publication.doi10.1080/15476286.2016.1212151
project.publication.pmid27471797
project.publication.published_date2016 Oct 2
project.statusreleased
project.submitted_datenull
project.released_date2016-09-08
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experiment.instrument.namePETRA III
experiment.instrument.cityDESY; Hamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL P12
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experiment.sample.molecule[0].short_namenull
experiment.sample.molecule[0].sequenceGGAAGAAAGAGGUCUGAGACAUUCUCUUAUAGGGGAGGCUGUGGUGAGGGAAUAUUAAGAGAAUUAACGGUCUAGUUCACCUCGACUUCUGGAGUUGACGUUGCUU
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experiment.sample.molecule[0].uniprot_sequencenull
experiment.sample.molecule[0].mw34.39
experiment.sample.molecule[0].total_mw68.781
experiment.sample.molecule[0].number_molecules2
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experiment.sample.buffer.additivenull
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experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameEMBL-Hamburg
experiment.contributor[0].affiliation[0].addressNotkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany
experiment.contributor[0].affiliation[0].full_nameEuropean Molecular Biology Laboratory (EMBL) - Hamburg outstation
experiment.contributor[0].affiliation[0].webpagehttp://www.embl-hamburg.de/index.php
experiment.contributor[0].contributor_nameErica
experiment.contributor[0].contributor_surnameValentini
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitmg/ml
experiment.date2013-10-31
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experiment.cell_temperature10.0
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last_modified2023-06-21T07:56:39.492710+02:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDAU7
statussuccess
started_at2026-08-11T15:39:44.830381+00:00
finished_at2026-08-11T15:39:53.495679+00:00
source_last_modified2023-06-21T07:56:39.492710+02:00
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查看完整 summary.json 原文
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  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
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    "publication": {
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      "author_list": "Szameit K, Berg K, Kruspe S, Valentini E, Magbanua E, Kwiatkowski M, Chauvot de Beauchêne I, Krichel B, Schamoni K, Uetrecht C, Svergun DI, Schlüter H, Zacharias M, Hahn U",
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查看完整 manifest.json 原文
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