SASDAV8

DEAD box helicase DDX3

数据类型：SASBDB 实验数据 状态：Published 曲线类型：Single concentration 最后更新：2023-06-21T07:56:39.492710+02:00

▼

1. 样品、组分与实验条件 Sample & Experiment

样品 1 · DEAD box helicase DDX3

浓度	— – 2.0 mg/ml	缓冲液 / pH	50 mM HEPES 150 mM NaCl / 7.5
Experimental temperature	10.0	设备 / 束线	PETRA III / EMBL P12
波长	0.12 nm	曝光	0.05 s × 20

分子组分

组分	类型 / Organism	UniProt 与Construct	寡聚状态	Molecular weight
DEAD box RNA helicase DDX3 (51-418)	proteinYersinia enterocolitica	—51–418	monomer分子数 1	41.5 kDa

实验曲线

曲线	点数 / 列	q range	误差质量	负强度点	来源文件
1	1622[3]	0.100182–4.36991 1/nm	含误差列缺失 0	13	sasbdb/entries/v8/sasdav8/source/SASDAV8.dat

▼

2. SASBDB 报告的指标 Reported Results

指标	方法	数值	误差	单位
dmax	P(r)	12.0	1.2	nm
i0	Guinier	4248.51	—	—
mw	Experimental	47.0	5.0	kDa
mw	Porod	50.0	5.0	kDa
porod_volume	Porod	80.2	—	nm³
rg	Guinier	2.83	0.2	nm
rg	P(r)	2.931	—	nm

这些数值是 SASBDB 来源记录，不是 SAXSdb 对实验曲线重新计算的结果。

▼

3. 来源拟合与模型 Source Fits & Models

拟合 1 · —

χ²：0.73CorMap p：2.4e-05单位：1/A

拟合数据拟合图残差图

模型	名称 / 类型	软件	Symmetry	模型 MW	PDB 声明	来源文件
1	—atomic	SASREF	—	41.48	—	模型图片

拟合 2 · —

χ²：1.22CorMap p：0.0单位：1/A

拟合数据拟合图残差图

模型	名称 / 类型	软件	Symmetry	模型 MW	PDB 声明	来源文件
1	—dummy	GASBOR 2.2i	—	—	—	模型图片日志

▶

4. 来源文件索引 Source Files

类别	路径	Download状态	大小
curve	sasbdb/entries/v8/sasdav8/source/SASDAV8.dat	downloaded	73251
full_entry_zip	sasbdb/entries/v8/sasdav8/source/SASDAV8.zip	downloaded	137574
pddf	sasbdb/entries/v8/sasdav8/source/SASDAV8.out	downloaded	122059
sascif	sasbdb/entries/v8/sasdav8/source/SASDAV8.sascif	downloaded	594094
summary	sasbdb/entries/v8/sasdav8/source/summary.json	downloaded	7545

▶

5. 实验说明与论文 Experiment & Publication

▼

6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”；Not declared的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称	50 mM HEPES 150 mM NaCl	缓冲液浓度	50.0 mM
pH	7.5	添加剂	150 mM NaCl
缓冲液说明	—
纯度测定方法	—	消光系数	—
吸收值	—	散射对比度	—
比体积 / 干体积	— / —	混合物 / 氘代	False / —

采集条件与仪器

测量日期	2013-11-13	储存 / 测量温度	10.0 / 10.0
曝光时间	0.05	帧数	20
波长	0.12	样品-探测器距离	3.1
光源	X-ray synchrotron	探测器	Pilatus 2M
机构 / 束线	PETRA III / EMBL P12 · DESY; Hamburg, Germany
q range	0.1 – 4.37	样品体积 / 流速	— / —

SASBDB 原始图

可Download文件

类别	文件	状态	大小	校验值	Download与查看
curve	sasbdb/entries/v8/sasdav8/source/SASDAV8.dat	downloaded	73251	a93ff44a71bad3395142334138cc5d531146ed6ccffdea9e82e2e6542f52ac0d	Download查看原文件源站
full_entry_zip	sasbdb/entries/v8/sasdav8/source/SASDAV8.zip	downloaded	137574	92d394f087e5a4b3fae51c726d585a7f9836fa80c77eb65d5cdb522b5034ccf6	Download查看原文件源站
pddf	sasbdb/entries/v8/sasdav8/source/SASDAV8.out	downloaded	122059	3e8782aabcef03c5ab9cb5390a4bffa88013d716ffb39cc935cd1ef66096ae4a	Download查看原文件源站
sascif	sasbdb/entries/v8/sasdav8/source/SASDAV8.sascif	downloaded	594094	5693a1bad05be8ac862f5b8529598a59b81e694d38ff8ddbd72a03021f439975	Download查看原文件源站
summary	sasbdb/entries/v8/sasdav8/source/summary.json	downloaded	7545	67a7800857e6a76b6e01ff929bfc9463c0f584c6e8c642c776eacb056a62efb0	Download查看原文件源站

curve：来源记录

{
  "path": "/data/saxsdb/sasbdb/entries/v8/sasdav8/source/SASDAV8.dat",
  "role": "curve",
  "sha256": "a93ff44a71bad3395142334138cc5d531146ed6ccffdea9e82e2e6542f52ac0d",
  "size": 73251,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/intensities_files/SASDAV8.dat"
}

full_entry_zip：来源记录与 ZIP 内部目录（6 项）

{
  "path": "/data/saxsdb/sasbdb/entries/v8/sasdav8/source/SASDAV8.zip",
  "role": "full_entry_zip",
  "sha256": "92d394f087e5a4b3fae51c726d585a7f9836fa80c77eb65d5cdb522b5034ccf6",
  "size": 137574,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/zip_directories/SASDAV8.zip",
  "zip_member_count": 6,
  "zip_members": [
    {
      "crc32": "8de7e09f",
      "name": "SASDAV8/experimental_data/SASDAV8.dat",
      "size": 73251
    },
    {
      "crc32": "4c0dde9c",
      "name": "SASDAV8/pddf/SASDAV8.out",
      "size": 122059
    },
    {
      "crc32": "ff29cd47",
      "name": "SASDAV8/SASDAV8_fit1.fit",
      "size": 92875
    },
    {
      "crc32": "564630f5",
      "name": "SASDAV8/SASDAV8_fit1_model1.pdb",
      "size": 154550
    },
    {
      "crc32": "425a1289",
      "name": "SASDAV8/SASDAV8_fit2.fir",
      "size": 22557
    },
    {
      "crc32": "217d8144",
      "name": "SASDAV8/SASDAV8_fit2_model1.pdb",
      "size": 46974
    }
  ],
  "zip_validation": "central_directory_readable"
}

pddf：来源记录

{
  "path": "/data/saxsdb/sasbdb/entries/v8/sasdav8/source/SASDAV8.out",
  "role": "pddf",
  "sha256": "3e8782aabcef03c5ab9cb5390a4bffa88013d716ffb39cc935cd1ef66096ae4a",
  "size": 122059,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/p_of_R_files/SASDAV8.out"
}

sascif：来源记录

{
  "path": "/data/saxsdb/sasbdb/entries/v8/sasdav8/source/SASDAV8.sascif",
  "role": "sascif",
  "sha256": "5693a1bad05be8ac862f5b8529598a59b81e694d38ff8ddbd72a03021f439975",
  "size": 594094,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDAV8.sascif"
}

summary：来源记录

{
  "path": "/data/saxsdb/sasbdb/entries/v8/sasdav8/source/summary.json",
  "sha256": "67a7800857e6a76b6e01ff929bfc9463c0f584c6e8c642c776eacb056a62efb0",
  "size": 7545,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDAV8/"
}

全部来源字段（无筛选）

这里自动展开来源记录中的每一个字段，包括空值、列表成员和页面上方已展示过的字段。

summary.json：179 个字段值

字段路径	原始值
code	SASDAV8
status	Published
type_of_curve	Single concentration
angular_unit	1/nm
project.title	Immunosuppressive Yersinia Effector YopM Binds DEAD Box Helicase DDX3 to Control Ribosomal S6 Kinase in the Nucleus of Host Cells.
project.publication.title	Immunosuppressive Yersinia Effector YopM Binds DEAD Box Helicase DDX3 to Control Ribosomal S6 Kinase in the Nucleus of Host Cells.
project.publication.author_list	Berneking L, Schnapp M, Rumm A, Trasak C, Ruckdeschel K, Alawi M, Grundhoff A, Kikhney AG, Koch-Nolte F, Buck F, Perbandt M, Betzel C, Svergun DI, Hentschke M, Aepfelbacher M
project.publication.journal	PLoS Pathog
project.publication.doi	10.1371/journal.ppat.1005660
project.publication.pmid	27300509
project.publication.published_date	2016 Jun
project.status	released
project.submitted_date	2015-07-06
project.released_date	2016-06-14
pddf_data	https://www.sasbdb.org/media/p_of_R_files/SASDAV8.out
intensities_data	https://www.sasbdb.org/media/intensities_files/SASDAV8.dat
intensities_log_plot	https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAV8_dat_img.png
intensities_kratky_plot	https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAV8_kratky_img.png
pddf_plot	https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDAV8_pofr_img.png
intensities_guinier_plot	https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAV8_guinier_img.png
sascif_data	https://www.sasbdb.org/media/sascif/sascif_files/SASDAV8.sascif
experiment.instrument.detector.type	null
experiment.instrument.detector.name	Pilatus 2M
experiment.instrument.detector.resolution	null
experiment.instrument.name	PETRA III
experiment.instrument.city	DESY; Hamburg
experiment.instrument.country	Germany
experiment.instrument.beamline_name	EMBL P12
experiment.instrument.beam_geometry	null
experiment.instrument.type_of_source	X-ray synchrotron
experiment.instrument.point_source	null
experiment.instrument.line_collimation	null
experiment.instrument.sample_path_length	null
experiment.instrument.line_collimation_slitlength	null
experiment.instrument.line_collimation_integrationwidth	null
experiment.instrument.xray_energy	null
experiment.instrument.beam_profile_ah	null
experiment.instrument.beam_profile_al	null
experiment.sample.molecule[0].long_name	DEAD box RNA helicase DDX3 (51-418)
experiment.sample.molecule[0].short_name	DDX3
experiment.sample.molecule[0].sequence	null
experiment.sample.molecule[0].organism	Yersinia enterocolitica
experiment.sample.molecule[0].uniprot_code	null
experiment.sample.molecule[0].uniprot_range_first	51
experiment.sample.molecule[0].uniprot_range_last	418
experiment.sample.molecule[0].oligomerization	monomer
experiment.sample.molecule[0].molecular_type	protein
experiment.sample.molecule[0].uniprot_sequence	null
experiment.sample.molecule[0].mw	41.5
experiment.sample.molecule[0].total_mw	41.5
experiment.sample.molecule[0].number_molecules	1
experiment.sample.molecule[0].complex_state	False
experiment.sample.molecule[0].deuteration	null
experiment.sample.molecule[0].molecule_source	biological
experiment.sample.molecule[0].molecule_description	null
experiment.sample.buffer.name	50 mM HEPES 150 mM NaCl
experiment.sample.buffer.concentration_unit	mM
experiment.sample.buffer.comment	null
experiment.sample.buffer.additive	150 mM NaCl
experiment.sample.buffer.concentration	50.0
experiment.sample.buffer.pka	null
experiment.sample.buffer.ph	7.5
experiment.sample.buffer.deuteration	null
experiment.sample.purity_method	null
experiment.sample.name	DEAD box helicase DDX3
experiment.sample.ext_coefficient	null
experiment.sample.contrast	null
experiment.sample.specific_vol	null
experiment.sample.dry_vol	null
experiment.sample.absorbption	null
experiment.sample.deuteration	null
experiment.sample.mixture	False
experiment.contributor[0].affiliation[0].short_name	EMBL-Hamburg
experiment.contributor[0].affiliation[0].address	Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany
experiment.contributor[0].affiliation[0].full_name	European Molecular Biology Laboratory (EMBL) - Hamburg outstation
experiment.contributor[0].affiliation[0].webpage	http://www.embl-hamburg.de/index.php
experiment.contributor[0].contributor_name	Al
experiment.contributor[0].contributor_surname	Kikhney
experiment.contributor[0].orcid	https://orcid.org/0000-0003-1321-3956
experiment.concentration_method	null
experiment.concentration_unit	mg/ml
experiment.date	2013-11-13
experiment.storage_temperature	10.0
experiment.cell_temperature	10.0
experiment.exposure_time	0.05
experiment.number_of_frames	20
experiment.wavelength	0.12
experiment.sample_detector_distance	3.1
experiment.concentration_min	null
experiment.concentration_max	2.0
experiment.sample_volume	null
experiment.flow_rate	null
experiment.s_min	0.1
experiment.s_max	4.37
experiment.total_exposure_time	1.0
experiment.seccolumn	null
fits[0].models[0].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDAV8_fit1_model1_img.png
fits[0].models[0].software	SASREF
fits[0].models[0].pdb_link	[]
fits[0].models[0].model_title	null
fits[0].models[0].type_of_model	atomic
fits[0].models[0].software_version
fits[0].models[0].model_data	https://www.sasbdb.org/media/pdb_file/SASDAV8_fit1_model1.pdb
fits[0].models[0].model_mw	41.48
fits[0].models[0].bead_radius	1.9
fits[0].models[0].log	null
fits[0].models[0].symmetry
fits[0].models[0].comment
fits[0].models[0].user	4
fits[0].fit_unit	1/A
fits[0].fit_plot	https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDAV8_fit1_fit_img.png
fits[0].software	null
fits[0].chi_square_value	0.73
fits[0].p_value	2.4e-05
fits[0].fit_residual_plot	SASDAV8_fit1_fitresiduals_img.png
fits[0].fit_data	https://www.sasbdb.org/media/fitting_files/SASDAV8_fit1.fit
fits[0].fit_log	null
fits[0].software_version	null
fits[0].description	null
fits[1].models[0].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDAV8_fit2_model1_img.png
fits[1].models[0].software	GASBOR
fits[1].models[0].pdb_link	[]
fits[1].models[0].model_title	null
fits[1].models[0].type_of_model	dummy
fits[1].models[0].software_version	2.2i
fits[1].models[0].model_data	https://www.sasbdb.org/media/pdb_file/SASDAV8_fit2_model1.pdb
fits[1].models[0].model_mw	null
fits[1].models[0].bead_radius	1.9
fits[1].models[0].log	https://www.sasbdb.org/media/log_files/ddx3-tr-1.log
fits[1].models[0].symmetry
fits[1].models[0].comment
fits[1].models[0].user	4
fits[1].fit_unit	1/A
fits[1].fit_plot	https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDAV8_fit2_fit_img.png
fits[1].software	null
fits[1].chi_square_value	1.22
fits[1].p_value	0.0
fits[1].fit_residual_plot	SASDAV8_fit2_fitresiduals_img.png
fits[1].fit_data	https://www.sasbdb.org/media/fitting_files/SASDAV8_fit2.fir
fits[1].fit_log	null
fits[1].software_version	null
fits[1].description	null
estimated_volume_method	null
pddf_software	ATSAS GNOM
pddf_software_version	GNOM 5.0
i0_calibration_standard	null
description	null
experiment_description	null
tags	[]
intensity_unit	null
experimental_mw	47.0
experimental_mw_error	5.0
guinier_i0_mw	null
guinier_i0_mw_error	null
porod_mw	50.0
porod_mw_error	5.0
pddf_i0	null
pddf_i0_error	null
guinier_i0	4248.51
guinier_i0_error	null
pddf_rg	2.931
pddf_rg_error	null
guinier_rg	2.83
guinier_rg_error	0.2
pddf_dmax	12.0
pddf_dmax_error	1.2
porod_volume	80.2
porod_volume_error	null
estimated_volume	null
estimated_volume_error	null
guinier_point_first	1
guinier_point_last	115
pddf_point_first	null
pddf_point_last	null
i0_calibration_standard_data	null
intensities_log_log_plot	SASDAV8_datloglog_img.png
symmetry	null
last_modified	2023-06-21T07:56:39.492710+02:00
bragg_peak	[]

manifest.json：36 个字段值

字段路径	原始值
code	SASDAV8
status	success
started_at	2026-08-11T16:01:26.592839+00:00
finished_at	2026-08-11T16:01:35.613692+00:00
source_last_modified	2023-06-21T07:56:39.492710+02:00
files[0].status	downloaded
files[0].url	https://www.sasbdb.org/rest-api/entry/summary/SASDAV8/
files[0].path	/data/saxsdb/sasbdb/entries/v8/sasdav8/source/summary.json
files[0].size	7545
files[0].sha256	67a7800857e6a76b6e01ff929bfc9463c0f584c6e8c642c776eacb056a62efb0
files[1].status	downloaded
files[1].url	https://www.sasbdb.org/media/intensities_files/SASDAV8.dat
files[1].path	/data/saxsdb/sasbdb/entries/v8/sasdav8/source/SASDAV8.dat
files[1].size	73251
files[1].sha256	a93ff44a71bad3395142334138cc5d531146ed6ccffdea9e82e2e6542f52ac0d
files[1].role	curve
files[2].status	downloaded
files[2].url	https://www.sasbdb.org/media/p_of_R_files/SASDAV8.out
files[2].path	/data/saxsdb/sasbdb/entries/v8/sasdav8/source/SASDAV8.out
files[2].size	122059
files[2].sha256	3e8782aabcef03c5ab9cb5390a4bffa88013d716ffb39cc935cd1ef66096ae4a
files[2].role	pddf
files[3].status	downloaded
files[3].url	https://www.sasbdb.org/media/sascif/sascif_files/SASDAV8.sascif
files[3].path	/data/saxsdb/sasbdb/entries/v8/sasdav8/source/SASDAV8.sascif
files[3].size	594094
files[3].sha256	5693a1bad05be8ac862f5b8529598a59b81e694d38ff8ddbd72a03021f439975
files[3].role	sascif
files[4].status	downloaded
files[4].url	https://www.sasbdb.org/media/zip_directories/SASDAV8.zip
files[4].path	/data/saxsdb/sasbdb/entries/v8/sasdav8/source/SASDAV8.zip
files[4].size	137574
files[4].sha256	92d394f087e5a4b3fae51c726d585a7f9836fa80c77eb65d5cdb522b5034ccf6
files[4].role	full_entry_zip
files[4].zip_member_count	6
files[4].zip_validation	central_directory_readable

查看完整 summary.json 原文

{
  "code": "SASDAV8",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "Immunosuppressive Yersinia Effector YopM Binds DEAD Box Helicase DDX3 to Control Ribosomal S6 Kinase in the Nucleus of Host Cells.",
    "publication": {
      "title": "Immunosuppressive Yersinia Effector YopM Binds DEAD Box Helicase DDX3 to Control Ribosomal S6 Kinase in the Nucleus of Host Cells.",
      "author_list": "Berneking L, Schnapp M, Rumm A, Trasak C, Ruckdeschel K, Alawi M, Grundhoff A, Kikhney AG, Koch-Nolte F, Buck F, Perbandt M, Betzel C, Svergun DI, Hentschke M, Aepfelbacher M",
      "journal": "PLoS Pathog",
      "doi": "10.1371/journal.ppat.1005660",
      "pmid": "27300509",
      "published_date": "2016 Jun"
    },
    "status": "released",
    "submitted_date": "2015-07-06",
    "released_date": "2016-06-14"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDAV8.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDAV8.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAV8_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAV8_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDAV8_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDAV8_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDAV8.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "Pilatus 2M",
        "resolution": null
      },
      "name": "PETRA III",
      "city": "DESY; Hamburg",
      "country": "Germany",
      "beamline_name": "EMBL P12",
      "beam_geometry": null,
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "DEAD box RNA helicase DDX3 (51-418)",
          "short_name": "DDX3",
          "sequence": null,
          "organism": "Yersinia enterocolitica",
          "uniprot_code": null,
          "uniprot_range_first": 51,
          "uniprot_range_last": 418,
          "oligomerization": "monomer",
          "molecular_type": "protein",
          "uniprot_sequence": null,
          "mw": 41.5,
          "total_mw": 41.5,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": null
        }
      ],
      "buffer": {
        "name": "50 mM HEPES 150 mM NaCl",
        "concentration_unit": "mM",
        "comment": null,
        "additive": "150 mM NaCl",
        "concentration": 50.0,
        "pka": null,
        "ph": 7.5,
        "deuteration": null
      },
      "purity_method": null,
      "name": "DEAD box helicase DDX3",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": false
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": "EMBL-Hamburg",
            "address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
            "full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
            "webpage": "http://www.embl-hamburg.de/index.php"
          }
        ],
        "contributor_name": "Al",
        "contributor_surname": "Kikhney",
        "orcid": "https://orcid.org/0000-0003-1321-3956"
      }
    ],
    "concentration_method": null,
    "concentration_unit": "mg/ml",
    "date": "2013-11-13",
    "storage_temperature": 10.0,
    "cell_temperature": 10.0,
    "exposure_time": 0.05,
    "number_of_frames": 20,
    "wavelength": 0.12,
    "sample_detector_distance": 3.1,
    "concentration_min": null,
    "concentration_max": 2.0,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.1,
    "s_max": 4.37,
    "total_exposure_time": 1.0,
    "seccolumn": null
  },
  "fits": [
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDAV8_fit1_model1_img.png",
          "software": "SASREF",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": "",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDAV8_fit1_model1.pdb",
          "model_mw": 41.48,
          "bead_radius": 1.9,
          "log": null,
          "symmetry": "",
          "comment": "",
          "user": 4
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDAV8_fit1_fit_img.png",
      "software": null,
      "chi_square_value": 0.73,
      "p_value": 2.4e-05,
      "fit_residual_plot": "SASDAV8_fit1_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDAV8_fit1.fit",
      "fit_log": null,
      "software_version": null,
      "description": null
    },
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDAV8_fit2_model1_img.png",
          "software": "GASBOR",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "dummy",
          "software_version": "2.2i",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDAV8_fit2_model1.pdb",
          "model_mw": null,
          "bead_radius": 1.9,
          "log": "https://www.sasbdb.org/media/log_files/ddx3-tr-1.log",
          "symmetry": "",
          "comment": "",
          "user": 4
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDAV8_fit2_fit_img.png",
      "software": null,
      "chi_square_value": 1.22,
      "p_value": 0.0,
      "fit_residual_plot": "SASDAV8_fit2_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDAV8_fit2.fir",
      "fit_log": null,
      "software_version": null,
      "description": null
    }
  ],
  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": "GNOM 5.0",
  "i0_calibration_standard": null,
  "description": null,
  "experiment_description": null,
  "tags": [],
  "intensity_unit": null,
  "experimental_mw": 47.0,
  "experimental_mw_error": 5.0,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": 50.0,
  "porod_mw_error": 5.0,
  "pddf_i0": null,
  "pddf_i0_error": null,
  "guinier_i0": 4248.51,
  "guinier_i0_error": null,
  "pddf_rg": 2.931,
  "pddf_rg_error": null,
  "guinier_rg": 2.83,
  "guinier_rg_error": 0.2,
  "pddf_dmax": 12.0,
  "pddf_dmax_error": 1.2,
  "porod_volume": 80.2,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 1,
  "guinier_point_last": 115,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDAV8_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2023-06-21T07:56:39.492710+02:00",
  "bragg_peak": []
}

查看完整 manifest.json 原文

{
  "code": "SASDAV8",
  "status": "success",
  "started_at": "2026-08-11T16:01:26.592839+00:00",
  "finished_at": "2026-08-11T16:01:35.613692+00:00",
  "source_last_modified": "2023-06-21T07:56:39.492710+02:00",
  "files": [
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDAV8/",
      "path": "/data/saxsdb/sasbdb/entries/v8/sasdav8/source/summary.json",
      "size": 7545,
      "sha256": "67a7800857e6a76b6e01ff929bfc9463c0f584c6e8c642c776eacb056a62efb0"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/intensities_files/SASDAV8.dat",
      "path": "/data/saxsdb/sasbdb/entries/v8/sasdav8/source/SASDAV8.dat",
      "size": 73251,
      "sha256": "a93ff44a71bad3395142334138cc5d531146ed6ccffdea9e82e2e6542f52ac0d",
      "role": "curve"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/p_of_R_files/SASDAV8.out",
      "path": "/data/saxsdb/sasbdb/entries/v8/sasdav8/source/SASDAV8.out",
      "size": 122059,
      "sha256": "3e8782aabcef03c5ab9cb5390a4bffa88013d716ffb39cc935cd1ef66096ae4a",
      "role": "pddf"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDAV8.sascif",
      "path": "/data/saxsdb/sasbdb/entries/v8/sasdav8/source/SASDAV8.sascif",
      "size": 594094,
      "sha256": "5693a1bad05be8ac862f5b8529598a59b81e694d38ff8ddbd72a03021f439975",
      "role": "sascif"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/zip_directories/SASDAV8.zip",
      "path": "/data/saxsdb/sasbdb/entries/v8/sasdav8/source/SASDAV8.zip",
      "size": 137574,
      "sha256": "92d394f087e5a4b3fae51c726d585a7f9836fa80c77eb65d5cdb522b5034ccf6",
      "role": "full_entry_zip",
      "zip_member_count": 6,
      "zip_validation": "central_directory_readable"
    }
  ]
}

Title	Immunosuppressive Yersinia Effector YopM Binds DEAD Box Helicase DDX3 to Control Ribosomal S6 Kinase in the Nucleus of Host Cells.
作者	Berneking L, Schnapp M, Rumm A, Trasak C, Ruckdeschel K, Alawi M, Grundhoff A, Kikhney AG, Koch-Nolte F, Buck F, Perbandt M, Betzel C, Svergun DI, Hentschke M, Aepfelbacher M
DOI / PMID	10.1371/journal.ppat.1005660 / 27300509