SASDAY4

fH1015

Data type: SASBDB experimental data Status: Published Curve type: Merged Last updated: 2023-05-25T11:22:16.556436+02:00
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1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · fH1015

Concentration2.4 – 10.5 mg/mlBuffer / pH50 mM Potassium Phosphate / 7.4
Experimental temperature10.0 Facility / beamlineDORIS III, DESY / EMBL X33
Wavelength— nmExposure120.0 s × 1

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
Factor H CCP modules 10 to 15
View sequence
AGECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFGLSPDLPICKEQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVDGEWTTLPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHRSITCIHGVWTQLPQCVAIDKLKKCKSSNLIILEEHLKNKKEFDHNSNIRYRCRGKEGWIHTVCINGRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQENYLIQEGEEITCKDGRWQSIPLCVEKIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTCYMGKWSSPPQCE
proteinHomo sapiens——–—monomerMolecule count 140.9 kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
11989[3]0.2111–4.786 1/nmHas uncertainty columnMissing 00sasbdb/entries/y4/sasday4/source/SASDAY4.dat
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2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)10.4—nm
i0Guinier1.62——
mwExperimental46.0—kDa
mwGuinier I(0)46.0—kDa
porod_volumePorod68.0—nm³
rgGuinier3.0—nm
rgP(r)3.1—nm

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

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3. Source Fits and Models Source Fits & Models

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4. Source File Index Source Files

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5. Experiment Description and Publication Experiment & Publication

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6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name50 mM Potassium PhosphateBuffer concentration50.0 mM
pH7.4Additives—
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2008-12-02Storage / measurement temperature10.0 / 10.0
Exposure time120.0Frames1
Wavelength—Sample-to-detector distance—
SourceX-ray synchrotronDetectorMAR 345 Image Plate
Facility / beamlineDORIS III, DESY / EMBL X33 · Hamburg, Germany
q range0.211 – 4.786Sample volume / flow rate— / —

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

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All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json:225 field values
Field pathRaw value
codeSASDAY4
statusPublished
type_of_curveMerged
angular_unit1/nm
project.titleThe central portion of factor H (modules 10-15) is compact and contains a structurally deviant CCP module.
project.publication.titleThe central portion of factor H (modules 10-15) is compact and contains a structurally deviant CCP module.
project.publication.author_listSchmidt CQ, Herbert AP, Mertens HD, Guariento M, Soares DC, Uhrin D, Rowe AJ, Svergun DI, Barlow PN
project.publication.journalJ Mol Biol
project.publication.doi10.1016/j.jmb.2009.10.010
project.publication.pmid19835885
project.publication.published_date2010 Jan 8
project.statusreleased
project.submitted_datenull
project.released_date2015-07-07
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experiment.instrument.detector.resolutionnull
experiment.instrument.nameDORIS III, DESY
experiment.instrument.cityHamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL X33
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
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experiment.instrument.xray_energynull
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experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameFactor H CCP modules 10 to 15
experiment.sample.molecule[0].short_namefH1015
experiment.sample.molecule[0].sequenceAGECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFGLSPDLPICKE QVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVDGEWTTLPVCI VEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHRSITCIHGVWTQLPQCV AIDKLKKCKSSNLIILEEHLKNKKEFDHNSNIRYRCRGKEGWIHTVCINGRWDPEVNCSM AQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQENYLIQEGEEITCKDGRWQSIPLCV EKIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTCYMGKWSSPPQ CE
experiment.sample.molecule[0].organismHomo sapiens
experiment.sample.molecule[0].uniprot_codenull
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequencenull
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experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name50 mM Potassium Phosphate
experiment.sample.buffer.concentration_unitmM
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentration50.0
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.4
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experiment.sample.purity_methodnull
experiment.sample.namefH1015
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameEMBL-Hamburg
experiment.contributor[0].affiliation[0].addressNotkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany
experiment.contributor[0].affiliation[0].full_nameEuropean Molecular Biology Laboratory (EMBL) - Hamburg outstation
experiment.contributor[0].affiliation[0].webpagehttp://www.embl-hamburg.de/index.php
experiment.contributor[0].contributor_nameHaydyn
experiment.contributor[0].contributor_surnameMertens
experiment.contributor[0].orcidnull
experiment.concentration_methodA280
experiment.concentration_unitmg/ml
experiment.date2008-12-02
experiment.storage_temperature10.0
experiment.cell_temperature10.0
experiment.exposure_time120.0
experiment.number_of_frames1
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experiment.sample_detector_distancenull
experiment.concentration_min2.4
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experiment.sample_volumenull
experiment.flow_ratenull
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experiment.s_max4.786
experiment.total_exposure_timenull
experiment.seccolumnnull
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bragg_peak[]
manifest.json:36 field values
Field pathRaw value
codeSASDAY4
statussuccess
started_at2026-08-11T14:34:09.598381+00:00
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View the complete summary.json source
{
  "code": "SASDAY4",
  "status": "Published",
  "type_of_curve": "Merged",
  "angular_unit": "1/nm",
  "project": {
    "title": "The central portion of factor H (modules 10-15) is compact and contains a structurally deviant CCP module.",
    "publication": {
      "title": "The central portion of factor H (modules 10-15) is compact and contains a structurally deviant CCP module.",
      "author_list": "Schmidt CQ, Herbert AP, Mertens HD, Guariento M, Soares DC, Uhrin D, Rowe AJ, Svergun DI, Barlow PN",
      "journal": "J Mol Biol",
      "doi": "10.1016/j.jmb.2009.10.010",
      "pmid": "19835885",
      "published_date": "2010 Jan 8"
    },
    "status": "released",
    "submitted_date": null,
    "released_date": "2015-07-07"
  },
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