查看完整 summary.json 原文
{
"code": "SASDB35",
"status": "Published",
"type_of_curve": "Extrapolated to infinite dilution",
"angular_unit": "1/nm",
"project": {
"title": "Staphylococcus aureus thiaminase II: oligomerization warrants proteolytic protection against serine proteases.",
"publication": {
"title": "Staphylococcus aureus thiaminase II: oligomerization warrants proteolytic protection against serine proteases.",
"author_list": "Begum A, Drebes J, Kikhney A, Müller IB, Perbandt M, Svergun D, Wrenger C, Betzel C",
"journal": "Acta Crystallogr D Biol Crystallogr",
"doi": "10.1107/S0907444913021550",
"pmid": "24311574",
"published_date": "2013 Dec"
},
"status": "released",
"submitted_date": "2016-07-06",
"released_date": "2016-07-07"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDB35.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDB35.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDB35_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDB35_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDB35_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDB35_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDB35.sascif",
"experiment": {
"instrument": {
"detector": {
"type": "Custom-built",
"name": "Pilatus 1M-W",
"resolution": 0.172
},
"name": "DORIS III, DESY",
"city": "Hamburg",
"country": "Germany",
"beamline_name": "EMBL X33",
"beam_geometry": "0.60",
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Thiaminase type II enzyme",
"short_name": "SaTenA",
"sequence": ">sp|Q6GEY1|TENA_STAAR Aminopyrimidine aminohydrolase OS=Staphylococcus aureus (strain MRSA252) GN=tenA PE=1 SV=1\r\nMEFSQKLYQAAKPIINDIYEDDFIQKMLLGNIQADALRHYLQADAAYLKEFTNLYALLIP\r\nKMNSMNDVKFLVEQIEFMVEGEVLAHDILAQIVGESYEEIIKTKVWPPSGDHYIKHMYFQ\r\nAHSRENAIYTIAAMAPCPYIYAELAKRSQSDHKLNREKDTAKWFDFYSTEMDDIINVFES\r\nLMNKLAESMSDKELEQVKQVFLESCIHERRFFNMAMTLEQWEFGGKVND",
"organism": "Staphylococcus aureus",
"uniprot_code": "Q6GEY1",
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "tetramer",
"molecular_type": "protein",
"uniprot_sequence": "MEFSQKLYQAAKPIINDIYEDDFIQKMLLGNIQADALRHYLQADAAYLKEFTNLYALLIP\nKMNSMNDVKFLVEQIEFMVEGEVLAHDILAQIVGESYEEIIKTKVWPPSGDHYIKHMYFQ\nAHSRENAIYTIAAMAPCPYIYAELAKRSQSDHKLNREKDTAKWFDFYSTEMDDIINVFES\nLMNKLAESMSDKELEQVKQVFLESCIHERRFFNMAMTLEQWEFGGKVND",
"mw": 26.84,
"total_mw": 107.36,
"number_molecules": 4,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "100 mM Tris-HCl",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "Staphylococcus aureus thiaminase II",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": false
},
"contributor": [
{
"affiliation": [
{
"short_name": "EMBL-Hamburg",
"address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
"full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
"webpage": "http://www.embl-hamburg.de/index.php"
}
],
"contributor_name": "Al",
"contributor_surname": "Kikhney",
"orcid": "https://orcid.org/0000-0003-1321-3956"
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2011-05-11",
"storage_temperature": null,
"cell_temperature": 5.0,
"exposure_time": 15.0,
"number_of_frames": 8,
"wavelength": 0.15,
"sample_detector_distance": 2.7,
"concentration_min": 1.2,
"concentration_max": 7.2,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.171,
"s_max": 6.024,
"total_exposure_time": 120.0,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDB35_fit1_model1_img.png",
"software": "PDB (Protein Data Bank)",
"pdb_link": [
{
"pdb_code": "4fn6",
"ext_code": "4fn6",
"ext_type": "pdb",
"difference_with_model": "identical"
}
],
"model_title": null,
"type_of_model": "atomic",
"software_version": "2.8.2",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDB35_fit1_model1.pdb",
"model_mw": 106.6,
"bead_radius": null,
"log": "https://www.sasbdb.org/media/log_files/4FN601.log",
"symmetry": "P222",
"comment": "",
"user": 4
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDB35_fit1_fit_img.png",
"software": null,
"chi_square_value": 1.218,
"p_value": 0.0,
"fit_residual_plot": "SASDB35_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDB35_fit1.fit",
"fit_log": null,
"software_version": null,
"description": null
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "GNOM",
"i0_calibration_standard": null,
"description": null,
"experiment_description": null,
"tags": [
"X33"
],
"intensity_unit": null,
"experimental_mw": 105.0,
"experimental_mw_error": 20.0,
"guinier_i0_mw": null,
"guinier_i0_mw_error": null,
"porod_mw": 105.0,
"porod_mw_error": 20.0,
"pddf_i0": 83.43,
"pddf_i0_error": null,
"guinier_i0": 84.12,
"guinier_i0_error": null,
"pddf_rg": 3.33,
"pddf_rg_error": null,
"guinier_rg": 3.35,
"guinier_rg_error": 0.2,
"pddf_dmax": 11.0,
"pddf_dmax_error": 1.0,
"porod_volume": 168.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 1,
"guinier_point_last": 80,
"pddf_point_first": 1,
"pddf_point_last": 809,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDB35_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-05-25T11:21:52.654103+02:00",
"bragg_peak": []
}查看完整 manifest.json 原文
{
"code": "SASDB35",
"status": "success",
"started_at": "2026-08-11T14:36:38.263133+00:00",
"finished_at": "2026-08-11T14:36:48.280520+00:00",
"source_last_modified": "2023-05-25T11:21:52.654103+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDB35/",
"path": "/data/saxsdb/sasbdb/entries/35/sasdb35/source/summary.json",
"size": 7268,
"sha256": "1aff707d24e87c22abb03e18f906a4aeee5149877ff89059028801959f5997a8"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDB35.dat",
"path": "/data/saxsdb/sasbdb/entries/35/sasdb35/source/SASDB35.dat",
"size": 94574,
"sha256": "a7ec827de469ed3b3bc0d57dcfa32803b96fbefc8bb5d52f401bec66394723ab",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDB35.out",
"path": "/data/saxsdb/sasbdb/entries/35/sasdb35/source/SASDB35.out",
"size": 74359,
"sha256": "bfdceaca7936f0c12e36e8c9c95be38d87ad737aa92b107eb2b62b99a71d90f9",
"role": "pddf"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDB35.sascif",
"path": "/data/saxsdb/sasbdb/entries/35/sasdb35/source/SASDB35.sascif",
"size": 956333,
"sha256": "1af709b3a19f304569ac231db353454076fd49bb5e0ebefea12f416a2b6c07fc",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDB35.zip",
"path": "/data/saxsdb/sasbdb/entries/35/sasdb35/source/SASDB35.zip",
"size": 385802,
"sha256": "ef3991033b63353de3bae4c12176bf0e4730785aeff869fdaee8cd16ec850d34",
"role": "full_entry_zip",
"zip_member_count": 4,
"zip_validation": "central_directory_readable"
}
]
}
