查看完整 summary.json 原文
{
"code": "SASDB55",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "Structural basis of myelin-associated glycoprotein adhesion and signalling.",
"publication": {
"title": "Structural basis of myelin-associated glycoprotein adhesion and signalling.",
"author_list": "Pronker MF, Lemstra S, Snijder J, Heck AJ, Thies-Weesie DM, Pasterkamp RJ, Janssen BJ",
"journal": "Nat Commun",
"doi": "10.1038/ncomms13584",
"pmid": "27922006",
"published_date": "2016 Dec 6"
},
"status": "released",
"submitted_date": "2016-07-24",
"released_date": "2016-12-13"
},
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"name": "Pilatus 1M",
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},
"name": "ESRF",
"city": "Grenoble",
"country": "France",
"beamline_name": "BM29",
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"type_of_source": "X-ray synchrotron",
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{
"long_name": "Myelin-associated glycoprotein Ig domains 1-5",
"short_name": "MAG",
"sequence": "GHWGAWMPSTI SAFEGTCVSI PCRFDFPDEL\r\nRPAVVHGVWY FNSPYPKNYP PVVFKSRTQV VHESFQGRSR LLGDLGLRNC\r\nTLLLSTLSPE LGGKYYFRGD LGGYNQYTFS EHSVLDIVNT PNIVVPPEVV\r\nAGTEVEVSCM VPDNCPELRP ELSWLGHEGL GEPTVLGRLR EDEGTWVQVS\r\nLLHFVPTREA NGHRLGCQAA FPNTTLQFEG YASLDVKYPP VIVEMNSSVE\r\nAIEGSHVSLL CGADSNPPPL LTWMRDGMVL REAVAKSLYL DLEEVTPGED\r\nGVYACLAENA YGQDNRTVEL SVMYAPWKPT VNGTVVAVEG ETVSILCSTQ\r\nSNPDPILTIF KEKQILATVI YESQLQLELP AVTPEDDGEY WCVAENQYGQ\r\nRATAFNLSVE FAPIILLESH CAAARDTVQC LCVVKSNPEP SVAFELPSRN\r\nVTVNETEREF VYSERSGLLL TSILTIRGQA QAPPRVICTS RNLYGTQSLE\r\nLPFQGAHR",
"organism": "Mus musculus",
"uniprot_code": "P20917",
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"oligomerization": "dimer",
"molecular_type": "protein",
"uniprot_sequence": "MIFLATLPLFWIMISASRGGHWGAWMPSTISAFEGTCVSIPCRFDFPDELRPAVVHGVWY\nFNSPYPKNYPPVVFKSRTQVVHESFQGRSRLLGDLGLRNCTLLLSTLSPELGGKYYFRGD\nLGGYNQYTFSEHSVLDIVNTPNIVVPPEVVAGTEVEVSCMVPDNCPELRPELSWLGHEGL\nGEPTVLGRLREDEGTWVQVSLLHFVPTREANGHRLGCQAAFPNTTLQFEGYASLDVKYPP\nVIVEMNSSVEAIEGSHVSLLCGADSNPPPLLTWMRDGMVLREAVAKSLYLDLEEVTPGED\nGVYACLAENAYGQDNRTVELSVMYAPWKPTVNGTVVAVEGETVSILCSTQSNPDPILTIF\nKEKQILATVIYESQLQLELPAVTPEDDGEYWCVAENQYGQRATAFNLSVEFAPIILLESH\nCAAARDTVQCLCVVKSNPEPSVAFELPSRNVTVNETEREFVYSERSGLLLTSILTIRGQA\nQAPPRVICTSRNLYGTQSLELPFQGAHRLMWAKIGPVGAVVAFAILIAIVCYITQTRRKK\nNVTESSSFSGGDNPHVLYSPEFRISGAPDKYESEKQRLGSERRLLGLRGESPELDLSYSH\nSDLGKRPTKDSYTLTEELAEYAEIRVK",
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}
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"concentration": 25.0,
"pka": null,
"ph": 7.5,
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},
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"name": "Glycosylated myelin-associated glycoprotein full extracellular domain (immunoglobulin domains 1-5)",
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},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "Utrecht, Netherlands",
"full_name": "Utrecht University",
"webpage": "http://www.uu.nl/"
}
],
"contributor_name": "Matti",
"contributor_surname": "Pronker",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": "mg/ml",
"date": "2014-09-11",
"storage_temperature": 20.0,
"cell_temperature": 20.0,
"exposure_time": 2.0,
"number_of_frames": 9,
"wavelength": 0.93,
"sample_detector_distance": 2.43,
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"s_min": 0.036,
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},
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"description": "The model fit displayed in this entry represents the volume fraction weighted contributions of the myelin-associated glycoprotein monomer and dimer structures (determined from X-ray crystallography) present in the sample.",
"experiment_description": "X-ray synchrotron radiation scattering data from solutions of myelin-associated glycoprotein in 25 mM HEPES, 150 mM NaCl, pH 7.5 were collected on the BM29 camera on the storage ring ESRF (Grenoble, France) using a 2D Photon counting Pilatus 1M pixel detector (I(s) vs s, where s = 4π sin θ/λ; 2θ is the scattering angle). One solute concentration of 3.38 mg/ml was measured from nine successive 2 second frames. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted and the different curves were scaled for protein concentration. The low angle data collected were obtained from a single concentration scattering curve.",
"tags": [],
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"intensities_log_log_plot": "SASDB55_datloglog_img.png",
"symmetry": null,
"last_modified": "2019-12-06T13:07:15.624532+01:00",
"bragg_peak": []
}查看完整 manifest.json 原文
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