查看完整 summary.json 原文
{
"code": "SASDB69",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/nm",
"project": {
"title": "Functional and structural insight into properdin control of complement alternative pathway amplification.",
"publication": {
"title": "Functional and structural insight into properdin control of complement alternative pathway amplification.",
"author_list": "Pedersen DV, Roumenina L, Jensen RK, Gadeberg TA, Marinozzi C, Picard C, Rybkine T, Thiel S, Sørensen UB, Stover C, Fremeaux-Bacchi V, Andersen GR",
"journal": "EMBO J",
"doi": "10.15252/embj.201696173",
"pmid": "28264884",
"published_date": "2017 Apr 13"
},
"status": "released",
"submitted_date": "2017-01-02",
"released_date": "2017-03-12"
},
"pddf_data": null,
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDB69.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDB69_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDB69_kratky_img.png",
"pddf_plot": null,
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDB69_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDB69.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus 2M",
"resolution": null
},
"name": "PETRA III",
"city": "DESY; Hamburg",
"country": "Germany",
"beamline_name": "EMBL P12",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "E244K Human Properdin",
"short_name": "E244K FP",
"sequence": "DPVLCFTQYEESSGKCKGLLGGGVSVEDCCLNTAFAYQKRSGGLCQPCRSPRWSLWSTWA\r\nPCSVTCSEGSQLRYRRCVGWNGQCSGKVAPGTLEWQLQACEDQQCCPEMGGWSGWGPWEP\r\nCSVTCSKGTRTRRRACNHPAPKCGGHCPGQAQESEACDTQQVCPTHGAWATWGPWTPCSA\r\nSCHGGPHEPKETRSRKCSAPEPSQKPPGKPCPGLAYKQRRCTGLPPCPENLYFQGVAGGW\r\nGPWGPVSPCPVTCGLGQTMEQRTCNHPVPQHGGPFCAGDATRTHICNTAVPCPVDGEWDS\r\nWGEWSPCIRRNMKSISCQEIPGQQSRGRTCRGRKFDGHRCAGQQQDIRHCYSIQHCPLKG\r\nSWSEWSTWGLCMPPCGPNPTRARQRLCTPLLPKYPPTVSMVEGQGEKNVTFWGRPLPRCE\r\nELQGQKLVVEEKRPCLHVPACKDPEEEEL",
"organism": "Homo sapiens",
"uniprot_code": "P27918",
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MITEGAQAPRLLLPPLLLLLTLPATGSDPVLCFTQYEESSGKCKGLLGGGVSVEDCCLNT\nAFAYQKRSGGLCQPCRSPRWSLWSTWAPCSVTCSEGSQLRYRRCVGWNGQCSGKVAPGTL\nEWQLQACEDQQCCPEMGGWSGWGPWEPCSVTCSKGTRTRRRACNHPAPKCGGHCPGQAQE\nSEACDTQQVCPTHGAWATWGPWTPCSASCHGGPHEPKETRSRKCSAPEPSQKPPGKPCPG\nLAYEQRRCTGLPPCPVAGGWGPWGPVSPCPVTCGLGQTMEQRTCNHPVPQHGGPFCAGDA\nTRTHICNTAVPCPVDGEWDSWGEWSPCIRRNMKSISCQEIPGQQSRGRTCRGRKFDGHRC\nAGQQQDIRHCYSIQHCPLKGSWSEWSTWGLCMPPCGPNPTRARQRLCTPLLPKYPPTVSM\nVEGQGEKNVTFWGRPLPRCEELQGQKLVVEEKRPCLHVPACKDPEEEEL",
"mw": 49.345,
"total_mw": 49.345,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "10 mM HEPES 150 mM NaCl",
"concentration_unit": null,
"comment": null,
"additive": null,
"concentration": null,
"pka": null,
"ph": 7.2,
"deuteration": null
},
"purity_method": null,
"name": "E244K monomeric human Properdin",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": "Aarhus, Denmark",
"full_name": "Aarhus University",
"webpage": "http://www.au.dk"
}
],
"contributor_name": "Rasmus",
"contributor_surname": "Jensen",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2016-07-27",
"storage_temperature": 20.0,
"cell_temperature": 20.0,
"exposure_time": 0.05,
"number_of_frames": 20,
"wavelength": 0.124,
"sample_detector_distance": 3.0,
"concentration_min": null,
"concentration_max": 2.7,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.154,
"s_max": 2.799,
"total_exposure_time": null,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDB69_fit1_model1_img.png",
"software": "CORAL",
"pdb_link": [],
"model_title": null,
"type_of_model": "atomic",
"software_version": null,
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDB69_fit1_model1.pdb",
"model_mw": 53.64,
"bead_radius": null,
"log": null,
"symmetry": null,
"comment": null,
"user": 185
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDB69_fit1_fixed_fit_img.png",
"software": "CRYSOL",
"chi_square_value": 1.61,
"p_value": 0.0,
"fit_residual_plot": "SASDB69_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDB69_fit1.fit",
"fit_log": null,
"software_version": "Crysol3",
"description": ""
}
],
"estimated_volume_method": null,
"pddf_software": null,
"pddf_software_version": null,
"i0_calibration_standard": null,
"description": null,
"experiment_description": "Synchrotron SAXS data from solutions of recombinantly formed monomeric human E244K properdin in 10 mM HEPES pH 7.2, 150 mM NaCl, were collected EMBL-P12 bioSAXS beam line at the PETRAIII storage ring (Hamburg, Germany) equipped with a Pilatus 2M detector (I(s) vs s, where s = 4π sin θ/λ; 2θ is the scattering angle; λ = 0.124 nm). A solute concentration of 2.7 mg/ml was measured at 20°C. 20 successive 0.05 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted and scaled for protein concentration.",
"tags": [],
"intensity_unit": null,
"experimental_mw": 50.0,
"experimental_mw_error": null,
"guinier_i0_mw": null,
"guinier_i0_mw_error": null,
"porod_mw": null,
"porod_mw_error": null,
"pddf_i0": null,
"pddf_i0_error": null,
"guinier_i0": 16659.0,
"guinier_i0_error": 67.36,
"pddf_rg": null,
"pddf_rg_error": null,
"guinier_rg": 4.13,
"guinier_rg_error": 0.04,
"pddf_dmax": 15.0,
"pddf_dmax_error": null,
"porod_volume": null,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": 5,
"guinier_point_last": 59,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDB69_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-06-21T07:56:39.492710+02:00",
"bragg_peak": []
}查看完整 manifest.json 原文
{
"code": "SASDB69",
"status": "success",
"started_at": "2026-08-11T16:06:57.722024+00:00",
"finished_at": "2026-08-11T16:07:04.982186+00:00",
"source_last_modified": "2023-06-21T07:56:39.492710+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDB69/",
"path": "/data/saxsdb/sasbdb/entries/69/sasdb69/source/summary.json",
"size": 7703,
"sha256": "645a6900fe07fa9e454e637286af781a629ddfb71d81d066dfd05e7d4879aac0"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDB69.dat",
"path": "/data/saxsdb/sasbdb/entries/69/sasdb69/source/SASDB69.dat",
"size": 43528,
"sha256": "a0e17b928ea36f034049e2f63f8e9182b44c0857f555694ee0b2c5d7add0f320",
"role": "curve"
},
{
"role": "pddf",
"status": "not_listed",
"path": "/data/saxsdb/sasbdb/entries/69/sasdb69/source/SASDB69.out"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDB69.sascif",
"path": "/data/saxsdb/sasbdb/entries/69/sasdb69/source/SASDB69.sascif",
"size": 447469,
"sha256": "9bdaafefdee4f7f142016701a692ed3f2d1a17dff60eb7b24873c7c248844479",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDB69.zip",
"path": "/data/saxsdb/sasbdb/entries/69/sasdb69/source/SASDB69.zip",
"size": 90326,
"sha256": "d6d79b17346ea48318ef78963e608e95b0cd471d7f5dce437c0d1ba9cb4d8d8e",
"role": "full_entry_zip",
"zip_member_count": 3,
"zip_validation": "central_directory_readable"
}
]
}
