SASDB72

Death associated protein kinase (Basic Loop mutant)

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2023-06-21T07:56:39.492710+02:00

Characterisation of mutation of basic loop residues (R47E, R50E, R53E, R54E) on dimer formation of hDAPK2

1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Death associated protein kinase (Basic Loop mutant)

浓度— – 2.0 mg/ml缓冲液 / pH50 mM HEPES 250 mM NaCl 5mM CaCl2 0.25 mM TCEP 5% (v/v) glycerol / 7.5
Experimental temperature10.0 设备 / 束线PETRA III / EMBL P12
波长0.12 nm曝光0.05 s × 20

分子组分

组分类型 / OrganismUniProt 与Construct寡聚状态Molecular weight
Death associated protein kinase (Basic Loop mutant)
查看序列
GPMSEPFKQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKEQSEASEEGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPVDNQQAMVRRESVVNLENFRKQYVRRRWKLSFSIVSLCNHLTR
proteinHomo sapiens—–—other分子数 —37.3 kDa

实验曲线

曲线点数 / 列q range误差质量负强度点来源文件
11682[3]0.027543–4.45043 1/nm含误差列缺失 0261sasbdb/entries/72/sasdb72/source/SASDB72.dat

2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)7.5nm
estimated_volumeReported45000.0nm³
i0Guinier623.0
i0P(r)617.0
mwExperimental32.0kDa
mwPorod46.0kDa
porod_volumePorod78.0nm³
rgGuinier2.4nm
rgP(r)2.3nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

3. 来源拟合与模型 Source Fits & Models

4. 来源文件索引 Source Files

5. 实验说明与论文 Experiment & Publication

6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;Not declared的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称50 mM HEPES 250 mM NaCl 5mM CaCl2 0.25 mM TCEP 5% (v/v) glycerol缓冲液浓度50.0 mM
pH7.5添加剂250 mM NaCl, 5mM CaCl2, 0.25 mM TCEP, 5% [v/v] glycerol
缓冲液说明
纯度测定方法消光系数
吸收值散射对比度
比体积 / 干体积— / 45000混合物 / 氘代— / —

采集条件与仪器

测量日期2013-12-18储存 / 测量温度10.0 / 10.0
曝光时间0.05帧数20
波长0.12样品-探测器距离3.1
光源X-ray synchrotron探测器Pilatus 2M
机构 / 束线PETRA III / EMBL P12 · DESY; Hamburg, Germany
q range0.028 – 4.45样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可Download文件

类别文件状态大小校验值Download与查看
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pddfsasbdb/entries/72/sasdb72/source/SASDB72.outdownloaded1016370d53b096e2d9091eeeeaf03e477a46ece8eff63ade3e14b720e3147d95439885Download查看原文件源站
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curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(5 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:169 个字段值
字段路径原始值
codeSASDB72
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleDeath-Associated Protein Kinase Activity Is Regulated by Coupled Calcium/Calmodulin Binding to Two Distinct Sites.
project.publication.titleDeath-Associated Protein Kinase Activity Is Regulated by Coupled Calcium/Calmodulin Binding to Two Distinct Sites.
project.publication.author_listSimon B, Huart AS, Temmerman K, Vahokoski J, Mertens HD, Komadina D, Hoffmann JE, Yumerefendi H, Svergun DI, Kursula P, Schultz C, McCarthy AA, Hart DJ, Wilmanns M
project.publication.journalStructure
project.publication.doi10.1016/j.str.2016.03.020
project.publication.pmid27133022
project.publication.published_date2016 Jun 7
project.statusreleased
project.submitted_date2015-09-24
project.released_date2015-09-24
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experiment.instrument.detector.resolutionnull
experiment.instrument.namePETRA III
experiment.instrument.cityDESY; Hamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL P12
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experiment.sample.molecule[0].long_nameDeath associated protein kinase (Basic Loop mutant)
experiment.sample.molecule[0].short_namehDAPK2 BL mutant
experiment.sample.molecule[0].sequenceGPMSEPFKQQKVEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKEQSEASEEGVS REEIEREVSILRQVLHHNVITLHDVYENRTDVVLILELVSGGELFDFLAQKESLSEEEAT SFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNI FGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFD EEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPVDNQQAMVRRESVVNLENFR KQYVRRRWKLSFSIVSLCNHLTR
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experiment.sample.molecule[0].uniprot_codenull
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experiment.sample.molecule[0].molecular_typeprotein
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experiment.sample.buffer.concentration_unitmM
experiment.sample.buffer.commentnull
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experiment.sample.buffer.concentration50.0
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.5
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameDeath associated protein kinase (Basic Loop mutant)
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_vol45000
experiment.sample.absorbptionnull
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experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameEMBL-Hamburg
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experiment.contributor[0].affiliation[0].full_nameEuropean Molecular Biology Laboratory (EMBL) - Hamburg outstation
experiment.contributor[0].affiliation[0].webpagehttp://www.embl-hamburg.de/index.php
experiment.contributor[0].contributor_nameHaydyn
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experiment.contributor[0].orcidnull
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experiment.concentration_unitmg/ml
experiment.date2013-12-18
experiment.storage_temperature10.0
experiment.cell_temperature10.0
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experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.028
experiment.s_max4.45
experiment.total_exposure_timenull
experiment.seccolumnnull
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fits[0].models[0].bead_radius1.9
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fits[0].descriptionnull
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionGNOM
i0_calibration_standardnull
descriptionCharacterisation of mutation of basic loop residues (R47E, R50E, R53E, R54E) on dimer formation of hDAPK2
experiment_descriptionnull
tags[]
intensity_unitnull
experimental_mw32.0
experimental_mw_errornull
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estimated_volume_errornull
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guinier_point_last189
pddf_point_first48
pddf_point_last1274
i0_calibration_standard_datanull
intensities_log_log_plotSASDB72_datloglog_img.png
symmetrynull
last_modified2023-06-21T07:56:39.492710+02:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDB72
statussuccess
started_at2026-08-11T13:31:51.324340+00:00
finished_at2026-08-11T13:32:01.217923+00:00
source_last_modified2023-06-21T07:56:39.492710+02:00
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查看完整 summary.json 原文
{
  "code": "SASDB72",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "Death-Associated Protein Kinase Activity Is Regulated by Coupled Calcium/Calmodulin Binding to Two Distinct Sites.",
    "publication": {
      "title": "Death-Associated Protein Kinase Activity Is Regulated by Coupled Calcium/Calmodulin Binding to Two Distinct Sites.",
      "author_list": "Simon B, Huart AS, Temmerman K, Vahokoski J, Mertens HD, Komadina D, Hoffmann JE, Yumerefendi H, Svergun DI, Kursula P, Schultz C, McCarthy AA, Hart DJ, Wilmanns M",
      "journal": "Structure",
      "doi": "10.1016/j.str.2016.03.020",
      "pmid": "27133022",
      "published_date": "2016 Jun 7"
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查看完整 manifest.json 原文
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