查看完整 summary.json 原文
{
"code": "SASDB74",
"status": "Published",
"type_of_curve": "Extrapolated to infinite dilution",
"angular_unit": "1/nm",
"project": {
"title": "Calcium-Driven Folding of RTX Domain β-Rolls Ratchets Translocation of RTX Proteins through Type I Secretion Ducts.",
"publication": {
"title": "Calcium-Driven Folding of RTX Domain β-Rolls Ratchets Translocation of RTX Proteins through Type I Secretion Ducts.",
"author_list": "Bumba L, Masin J, Macek P, Wald T, Motlova L, Bibova I, Klimova N, Bednarova L, Veverka V, Kachala M, Svergun DI, Barinka C, Sebo P",
"journal": "Mol Cell",
"doi": "10.1016/j.molcel.2016.03.018",
"pmid": "27058787",
"published_date": "2016 Apr 7"
},
"status": "released",
"submitted_date": "2016-02-21",
"released_date": "2016-07-07"
},
"pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDB74.out",
"intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDB74.dat",
"intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDB74_dat_img.png",
"intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDB74_kratky_img.png",
"pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDB74_pofr_img.png",
"intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDB74_guinier_img.png",
"sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDB74.sascif",
"experiment": {
"instrument": {
"detector": {
"type": null,
"name": "Pilatus 2M",
"resolution": null
},
"name": "PETRA III",
"city": "DESY; Hamburg",
"country": "Germany",
"beamline_name": "EMBL P12",
"beam_geometry": null,
"type_of_source": "X-ray synchrotron",
"point_source": null,
"line_collimation": null,
"sample_path_length": null,
"line_collimation_slitlength": null,
"line_collimation_integrationwidth": null,
"xray_energy": null,
"beam_profile_ah": null,
"beam_profile_al": null
},
"sample": {
"molecule": [
{
"long_name": "Adenylate cyclase toxin Block I-V",
"short_name": "CyaA Block I-V",
"sequence": "EGDIHMSPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNL\r\nPYYIDGDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDF\r\nETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPK\r\nLVCFKKRIEAIPQIDKYLKSSKYIAWPLQGWQATFGGGDHPPKSDGSTSGSGHHHHHHSA\r\nGLVPRGSTAIGMKETAAAKFERQHMDSPDLGTGGGSGIEGRenlyfqglehvqhiiggagnd\r\nsitgnahdnflaggsgddrldggagndtlvggegqntviggagddvflqdlgvwsnqldg\r\ngagvdtvkynvhqpseerlermgdtgihadlqkgtvekwpalnlfsvdhvknienlhgsr\r\nlndriagddqdnelwghdgndtirgrggddilrgglgldtlygedgndiflqddetvsdd\r\nidggagldtvdysamihpgrivapheygfgieadlsrewvrkasalgvdyydnvrnvenv\r\nigtsmkdvligdaqantlmgqggddtvrggdgddllfggdgndmlygdagndtlygglgd\r\ndtleggagndwfgqtqarehdvlrggdgvdtvdysqtgahagiaagriglgiladlgagr\r\nvdklgeagssaydtvsgienvvgteladritgdaqanvlrgaggadvlaggegddvllgg\r\ndgddqlsgdagrdrlygeagddwffqdaanagnlldggdgrdtvdfsgpgrgldagakgv\r\nflslgkgfaslmdepetsnvlrnienavgsarddvligdaganvlnglagndvlsggagd\r\ndvllgdegsdllsgdagnddlfggqgddtylfgvgyghdtiyesggghdtirinagadql\r\nwfarqgndleirilgtddaltvhdwyrdadhrveiihaanqavdqagieklveamaqypd\r\np",
"organism": "Bordetella pertussis",
"uniprot_code": "P0DKX7",
"uniprot_range_first": null,
"uniprot_range_last": null,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MQQSHQAGYANAADRESGIPAAVLDGIKAVAKEKNATLMFRLVNPHSTSLIAEGVATKGL\nGVHAKSSDWGLQAGYIPVNPNLSKLFGRAPEVIARADNDVNSSLAHGHTAVDLTLSKERL\nDYLRQAGLVTGMADGVVASNHAGYEQFEFRVKETSDGRYAVQYRRKGGDDFEAVKVIGNA\nAGIPLTADIDMFAIMPHLSNFRDSARSSVTSGDSVTDYLARTRRAASEATGGLDRERIDL\nLWKIARAGARSAVGTEARRQFRYDGDMNIGVITDFELEVRNALNRRAHAVGAQDVVQHGT\nEQNNPFPEADEKIFVVSATGESQMLTRGQLKEYIGQQRGEGYVFYENRAYGVAGKSLFDD\nGLGAAPGVPSGRSKFSPDVLETVPASPGLRRPSLGAVERQDSGYDSLDGVGSRSFSLGEV\nSDMAAVEAAELEMTRQVLHAGARQDDAEPGVSGASAHWGQRALQGAQAVAAAQRLVHAIA\nLMTQFGRAGSTNTPQEAASLSAAVFGLGEASSAVAETVSGFFRGSSRWAGGFGVAGGAMA\nLGGGIAAAVGAGMSLTDDAPAGQKAAAGAEIALQLTGGTVELASSIALALAAARGVTSGL\nQVAGASAGAAAGALAAALSPMEIYGLVQQSHYADQLDKLAQESSAYGYEGDALLAQLYRD\nKTAAEGAVAGVSAVLSTVGAAVSIAAAASVVGAPVAVVTSLLTGALNGILRGVQQPIIEK\nLANDYARKIDELGGPQAYFEKNLQARHEQLANSDGLRKMLADLQAGWNASSVIGVQTTEI\nSKSALELAAITGNADNLKSVDVFVDRFVQGERVAGQPVVLDVAAGGIDIASRKGERPALT\nFITPLAAPGEEQRRRTKTGKSEFTTFVEIVGKQDRWRIRDGAADTTIDLAKVVSQLVDAN\nGVLKHSIKLDVIGGDGDDVVLANASRIHYDGGAGTNTVSYAALGRQDSITVSADGERFNV\nRKQLNNANVYREGVATQTTAYGKRTENVQYRHVELARVGQLVEVDTLEHVQHIIGGAGND\nSITGNAHDNFLAGGSGDDRLDGGAGNDTLVGGEGQNTVIGGAGDDVFLQDLGVWSNQLDG\nGAGVDTVKYNVHQPSEERLERMGDTGIHADLQKGTVEKWPALNLFSVDHVKNIENLHGSR\nLNDRIAGDDQDNELWGHDGNDTIRGRGGDDILRGGLGLDTLYGEDGNDIFLQDDETVSDD\nIDGGAGLDTVDYSAMIHPGRIVAPHEYGFGIEADLSREWVRKASALGVDYYDNVRNVENV\nIGTSMKDVLIGDAQANTLMGQGGDDTVRGGDGDDLLFGGDGNDMLYGDAGNDTLYGGLGD\nDTLEGGAGNDWFGQTQAREHDVLRGGDGVDTVDYSQTGAHAGIAAGRIGLGILADLGAGR\nVDKLGEAGSSAYDTVSGIENVVGTELADRITGDAQANVLRGAGGADVLAGGEGDDVLLGG\nDGDDQLSGDAGRDRLYGEAGDDWFFQDAANAGNLLDGGDGRDTVDFSGPGRGLDAGAKGV\nFLSLGKGFASLMDEPETSNVLRNIENAVGSARDDVLIGDAGANVLNGLAGNDVLSGGAGD\nDVLLGDEGSDLLSGDAGNDDLFGGQGDDTYLFGVGYGHDTIYESGGGHDTIRINAGADQL\nWFARQGNDLEIRILGTDDALTVHDWYRDADHRVEIIHAANQAVDQAGIEKLVEAMAQYPD\nPGAAAAAPPAARVPDTLMQSLAVNWR",
"mw": 70.0,
"total_mw": 70.0,
"number_molecules": 1,
"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
"molecule_description": null
}
],
"buffer": {
"name": "10 mM Tris HCl 150 mM NaCl 10 mM CaCl2",
"concentration_unit": "mM",
"comment": null,
"additive": "150 mM NaCl, 10 mM CaCl2",
"concentration": 10.0,
"pka": null,
"ph": 8.0,
"deuteration": null
},
"purity_method": null,
"name": "CyaA Block I-V",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": "EMBL-Hamburg",
"address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
"full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
"webpage": "http://www.embl-hamburg.de/index.php"
}
],
"contributor_name": "Michael",
"contributor_surname": "Kachala",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": "mg/ml",
"date": "2013-10-31",
"storage_temperature": 10.0,
"cell_temperature": 10.0,
"exposure_time": 0.05,
"number_of_frames": 20,
"wavelength": 0.12,
"sample_detector_distance": 3.1,
"concentration_min": 1.1,
"concentration_max": 4.4,
"sample_volume": null,
"flow_rate": null,
"s_min": 0.029,
"s_max": 4.488,
"total_exposure_time": 1.0,
"seccolumn": null
},
"fits": [
{
"models": [
{
"model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDB74_fit1_model1_img.png",
"software": "DAMMIF",
"pdb_link": [],
"model_title": null,
"type_of_model": "dummy",
"software_version": "",
"model_data": "https://www.sasbdb.org/media/pdb_file/SASDB74_fit1_model1.pdb",
"model_mw": 123.756,
"bead_radius": 4.75,
"log": null,
"symmetry": "",
"comment": "",
"user": 3
}
],
"fit_unit": "1/A",
"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDB74_fit1_fit_img.png",
"software": null,
"chi_square_value": 0.84,
"p_value": 0.386088,
"fit_residual_plot": "SASDB74_fit1_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDB74_fit1.fir",
"fit_log": null,
"software_version": null,
"description": null
}
],
"estimated_volume_method": null,
"pddf_software": "ATSAS GNOM",
"pddf_software_version": "GNOM 4.6",
"i0_calibration_standard": "BSA",
"description": null,
"experiment_description": null,
"tags": [],
"intensity_unit": null,
"experimental_mw": 91.0,
"experimental_mw_error": null,
"guinier_i0_mw": 91.0,
"guinier_i0_mw_error": null,
"porod_mw": 162.0,
"porod_mw_error": null,
"pddf_i0": 17070.0,
"pddf_i0_error": null,
"guinier_i0": 17551.0,
"guinier_i0_error": null,
"pddf_rg": 5.49,
"pddf_rg_error": null,
"guinier_rg": 5.55,
"guinier_rg_error": null,
"pddf_dmax": 17.15,
"pddf_dmax_error": null,
"porod_volume": 275.0,
"porod_volume_error": null,
"estimated_volume": null,
"estimated_volume_error": null,
"guinier_point_first": null,
"guinier_point_last": null,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDB74_datloglog_img.png",
"symmetry": null,
"last_modified": "2023-06-21T07:56:39.492710+02:00",
"bragg_peak": []
}查看完整 manifest.json 原文
{
"code": "SASDB74",
"status": "success",
"started_at": "2026-08-11T14:15:11.348916+00:00",
"finished_at": "2026-08-11T14:15:20.613863+00:00",
"source_last_modified": "2023-06-21T07:56:39.492710+02:00",
"files": [
{
"status": "downloaded",
"url": "https://www.sasbdb.org/rest-api/entry/summary/SASDB74/",
"path": "/data/saxsdb/sasbdb/entries/74/sasdb74/source/summary.json",
"size": 9240,
"sha256": "d67366a21a98943038b3037c79efb992bd525e351ba6c0983efb127300483fe4"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/intensities_files/SASDB74.dat",
"path": "/data/saxsdb/sasbdb/entries/74/sasdb74/source/SASDB74.dat",
"size": 78338,
"sha256": "ca0265dfbe23838ba6fd129a4a3bc275fc1810a8f4bc3f79b6c6b94ead0f23d2",
"role": "curve"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/p_of_R_files/SASDB74.out",
"path": "/data/saxsdb/sasbdb/entries/74/sasdb74/source/SASDB74.out",
"size": 41005,
"sha256": "f85e93db5b937178aa6bc2568cf51ac9e290a6d0d350e85b5440912f41033ff4",
"role": "pddf"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDB74.sascif",
"path": "/data/saxsdb/sasbdb/entries/74/sasdb74/source/SASDB74.sascif",
"size": 191762,
"sha256": "36d4243eac81abf8bf350dc5f8673f1b481040e9f73097e4c2dc54a3cce3b1b8",
"role": "sascif"
},
{
"status": "downloaded",
"url": "https://www.sasbdb.org/media/zip_directories/SASDB74.zip",
"path": "/data/saxsdb/sasbdb/entries/74/sasdb74/source/SASDB74.zip",
"size": 44576,
"sha256": "cdd2a395731aad0d162660032219cc89769ba62419454e81f46c7289cec314e8",
"role": "full_entry_zip",
"zip_member_count": 4,
"zip_validation": "central_directory_readable"
}
]
}
