查看完整 summary.json 原文
{
"code": "SASDB79",
"status": "Published",
"type_of_curve": "Single concentration",
"angular_unit": "1/A",
"project": {
"title": "Basic domain of telomere guardian TRF2 reduces D-loop unwinding whereas Rap1 restores it.",
"publication": {
"title": "Basic domain of telomere guardian TRF2 reduces D-loop unwinding whereas Rap1 restores it.",
"author_list": "Necasová I, Janoušková E, Klumpler T, Hofr C",
"journal": "Nucleic Acids Res",
"doi": "10.1093/nar/gkx812",
"pmid": "28981702",
"published_date": "2017 Dec 1"
},
"status": "released",
"submitted_date": "2017-01-06",
"released_date": "2017-09-18"
},
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"name": "Pilatus 100K",
"resolution": 172.0
},
"name": "CEITEC",
"city": "Brno",
"country": "Czech Republic",
"beamline_name": "Rigaku BioSAXS-1000",
"beam_geometry": "",
"type_of_source": "X-ray in house",
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{
"long_name": "Basic domain of telomeric repeat-binding factor 2",
"short_name": "TRF2",
"sequence": "GPPGSMAGGGGSSDGSGRAAGRRASRSSGRARRGRHEPGLGGPAERGAG",
"organism": "Homo sapiens",
"uniprot_code": "Q15554",
"uniprot_range_first": 42,
"uniprot_range_last": 86,
"oligomerization": "monomer",
"molecular_type": "protein",
"uniprot_sequence": "MAAGAGTAGPASGPGVVRDPAASQPRKRPGREGGEGARRSDTMAGGGGSSDGSGRAAGRR\nASRSSGRARRGRHEPGLGGPAERGAGEARLEEAVNRWVLKFYFHEALRAFRGSRYGDFRQ\nIRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEM\nIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNI\nIREKNLAHPVIQNFSYETFQQKMLRFLESHLDDAEPYLLTMAKKALKSESAASSTGKEDK\nQPAPGPVEKPPREPARQLRNPPTTIGMMTLKAAFKTLSGAQDSEAAFAKLDQKDLVLPTQ\nALPASPALKNKRPRKDENESSAPADGEGGSELQPKNKRMTISRLVLEEDSQSTEPSAGLN\nSSQEAASAPPSKPTVLNQPLPGEKNPKVPKGKWNSSNGVEEKETWVEEDELFQVQAAPDE\nDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG\nMN",
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"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
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},
{
"long_name": "telomere DNA duplex",
"short_name": null,
"sequence": "GTTAGGGTTAGGGTTAG\r\nCAATCCCAATCCCAATC",
"organism": null,
"uniprot_code": null,
"uniprot_range_first": null,
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"oligomerization": "monomer",
"molecular_type": "DNA",
"uniprot_sequence": null,
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"complex_state": false,
"deuteration": null,
"molecule_source": "biological",
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}
],
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"concentration_unit": null,
"comment": null,
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"concentration": null,
"pka": null,
"ph": 7.5,
"deuteration": null
},
"purity_method": null,
"name": "Basic domain of human telomeric repeat-binding factor 2 (TRF2) in complex with telomeric DNA duplex",
"ext_coefficient": null,
"contrast": null,
"specific_vol": null,
"dry_vol": null,
"absorbption": null,
"deuteration": null,
"mixture": null
},
"contributor": [
{
"affiliation": [
{
"short_name": null,
"address": null,
"full_name": "CEITEC - Central European Institute of Technology, Masaryk University",
"webpage": "https://www.ceitec.eu/"
}
],
"contributor_name": "Tomas",
"contributor_surname": "Klumpler",
"orcid": null
}
],
"concentration_method": null,
"concentration_unit": null,
"date": "2016-05-03",
"storage_temperature": 4.0,
"cell_temperature": 4.0,
"exposure_time": 3600.0,
"number_of_frames": 6,
"wavelength": 0.154,
"sample_detector_distance": 0.4791,
"concentration_min": null,
"concentration_max": 2.9,
"sample_volume": null,
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"s_min": 0.311,
"s_max": 3.004,
"total_exposure_time": null,
"seccolumn": null
},
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"user": 195
}
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{
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"fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDB79_fit2_fit_img.png",
"software": "MONSA",
"chi_square_value": 1.22,
"p_value": 0.002,
"fit_residual_plot": "SASDB79_fit2_fitresiduals_img.png",
"fit_data": "https://www.sasbdb.org/media/fitting_files/SASDB79_fit2.fit",
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"description": "The two-phase bead model of the protein-DNA complex was generated using MONSA refinement from SAXS data measured from the complex (top data-model fit) in parallel with data measured from the isolated telomeric DNA duplex (bottom data-model fit; refer to SASBDB entry SASDB89).",
"experiment_description": "SAXS data from solutions of the basic domain of human telomeric repeat-binding factor 2 (TRF2) in complex with a telomeric DNA duplex in 20 mM Tris-HCl, 50 mM LiCl, pH 7.5 were collected using a Rigaku BioSAXS-1000 instrument at CEITEC (Brno, Czech Republic) equipped with a Pilatus 100K detector at a sample-detector distance of 0.5 m (I(s) vs s, where = 4πsinθ/λ; 2θ is the scattering angle and λ = 0.154 nm). Six successive 3600 second frames were collected at a sample temperature of 4°C using a solute concentration of 2.9 mg/ml. The data were normalized to the intensity of the transmitted beam and radially averaged and the corresponding scattering from the solvent-blank was subtracted to produced the scattering profile displayed in this entry.",
"tags": [],
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"estimated_volume": null,
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"guinier_point_first": 5,
"guinier_point_last": 32,
"pddf_point_first": null,
"pddf_point_last": null,
"i0_calibration_standard_data": null,
"intensities_log_log_plot": "SASDB79_datloglog_img.png",
"symmetry": null,
"last_modified": "2019-12-06T13:07:15.624532+01:00",
"bragg_peak": []
}查看完整 manifest.json 原文
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