SASDB84

CyaA Block V

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Merged 最后更新:2023-06-21T07:56:39.492710+02:00

1. 样品、组分与实验条件 Sample & Experiment

样品 1 · CyaA Block V

浓度1.3 – 5.0 mg/ml缓冲液 / pH10 mM Tris HCl 150 mM NaCl 10 mM CaCl2 / 8.0
Experimental temperature10.0 设备 / 束线PETRA III / EMBL P12
波长0.12 nm曝光0.05 s × 20

分子组分

组分类型 / OrganismUniProt 与Construct寡聚状态Molecular weight
Adenylate cyclase toxin Block V
查看序列
GSARDDVLIGDAGANVLNGLAGNDVLSGGAGDDVLLGDEGSDLLSGDAGNDDLFGGQGDDTYLFGVGYGHDTIYESGGGHDTIRINAGADQLWFARQGNDLEIRILGTDDALTVHDWYRDADHRVEIIHAANQAVDQAGIEKLVEAMAQYPDP
proteinBordetella pertussisP0DKX7—–—monomer分子数 116.0 kDa

实验曲线

曲线点数 / 列q range误差质量负强度点来源文件
11180[3]0.0817443–3.18724 1/nm含误差列缺失 00sasbdb/entries/84/sasdb84/source/SASDB84.dat

2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)5.9nm
i0Guinier2266.34
i0P(r)2430.0
mwExperimental13.0kDa
mwGuinier I(0)13.0kDa
mwPorod14.0kDa
porod_volumePorod24.0nm³
rgGuinier1.8nm
rgP(r)1.8nm

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

3. 来源拟合与模型 Source Fits & Models

4. 来源文件索引 Source Files

5. 实验说明与论文 Experiment & Publication

6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;Not declared的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称10 mM Tris HCl 150 mM NaCl 10 mM CaCl2缓冲液浓度10.0 mM
pH8.0添加剂150 mM NaCl, 10 mM CaCl2
缓冲液说明
纯度测定方法消光系数
吸收值散射对比度
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2013-10-31储存 / 测量温度10.0 / 10.0
曝光时间0.05帧数20
波长0.12样品-探测器距离3.1
光源X-ray synchrotron探测器Pilatus 2M
机构 / 束线PETRA III / EMBL P12 · DESY; Hamburg, Germany
q range0.082 – 3.187样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可Download文件

类别文件状态大小校验值Download与查看
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summarysasbdb/entries/84/sasdb84/source/summary.jsondownloaded8344851660a71de6cae7b2621fac732e290f7f20ba8072096ee4ed96d18e0714ed52Download查看原文件源站
curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(4 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:156 个字段值
字段路径原始值
codeSASDB84
statusPublished
type_of_curveMerged
angular_unit1/nm
project.titleCalcium-Driven Folding of RTX Domain β-Rolls Ratchets Translocation of RTX Proteins through Type I Secretion Ducts.
project.publication.titleCalcium-Driven Folding of RTX Domain β-Rolls Ratchets Translocation of RTX Proteins through Type I Secretion Ducts.
project.publication.author_listBumba L, Masin J, Macek P, Wald T, Motlova L, Bibova I, Klimova N, Bednarova L, Veverka V, Kachala M, Svergun DI, Barinka C, Sebo P
project.publication.journalMol Cell
project.publication.doi10.1016/j.molcel.2016.03.018
project.publication.pmid27058787
project.publication.published_date2016 Apr 7
project.statusreleased
project.submitted_date2016-02-21
project.released_date2016-07-07
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experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus 2M
experiment.instrument.detector.resolutionnull
experiment.instrument.namePETRA III
experiment.instrument.cityDESY; Hamburg
experiment.instrument.countryGermany
experiment.instrument.beamline_nameEMBL P12
experiment.instrument.beam_geometrynull
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameAdenylate cyclase toxin Block V
experiment.sample.molecule[0].short_nameCyaA Block V
experiment.sample.molecule[0].sequenceGsarddvligdaganvlngl Agndvlsggagddvllgdeg Sdllsgdagnddlfggqgddt Ylfgvgyghdtiyesggghdt Irinagadqlwfarqgndlei Rilgtddaltvhdwyrdadhr veiihaanqavdqagieklveamaqypdp
experiment.sample.molecule[0].organismBordetella pertussis
experiment.sample.molecule[0].uniprot_codeP0DKX7
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
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experiment.sample.molecule[0].mw16.0
experiment.sample.molecule[0].total_mw16.0
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name10 mM Tris HCl 150 mM NaCl 10 mM CaCl2
experiment.sample.buffer.concentration_unitmM
experiment.sample.buffer.commentnull
experiment.sample.buffer.additive150 mM NaCl, 10 mM CaCl2
experiment.sample.buffer.concentration10.0
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph8.0
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameCyaA Block V
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameEMBL-Hamburg
experiment.contributor[0].affiliation[0].addressNotkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany
experiment.contributor[0].affiliation[0].full_nameEuropean Molecular Biology Laboratory (EMBL) - Hamburg outstation
experiment.contributor[0].affiliation[0].webpagehttp://www.embl-hamburg.de/index.php
experiment.contributor[0].contributor_nameMichael
experiment.contributor[0].contributor_surnameKachala
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitmg/ml
experiment.date2013-10-31
experiment.storage_temperature10.0
experiment.cell_temperature10.0
experiment.exposure_time0.05
experiment.number_of_frames20
experiment.wavelength0.12
experiment.sample_detector_distance3.1
experiment.concentration_min1.3
experiment.concentration_max5.0
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experiment.flow_ratenull
experiment.s_min0.082
experiment.s_max3.187
experiment.total_exposure_time1.0
experiment.seccolumnnull
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fits[0].softwarenull
fits[0].chi_square_value1.459
fits[0].p_value0.023303
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i0_calibration_standardBSA
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitnull
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last_modified2023-06-21T07:56:39.492710+02:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDB84
statussuccess
started_at2026-08-11T14:15:54.587880+00:00
finished_at2026-08-11T14:16:02.920567+00:00
source_last_modified2023-06-21T07:56:39.492710+02:00
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查看完整 summary.json 原文
{
  "code": "SASDB84",
  "status": "Published",
  "type_of_curve": "Merged",
  "angular_unit": "1/nm",
  "project": {
    "title": "Calcium-Driven Folding of RTX Domain β-Rolls Ratchets Translocation of RTX Proteins through Type I Secretion Ducts.",
    "publication": {
      "title": "Calcium-Driven Folding of RTX Domain β-Rolls Ratchets Translocation of RTX Proteins through Type I Secretion Ducts.",
      "author_list": "Bumba L, Masin J, Macek P, Wald T, Motlova L, Bibova I, Klimova N, Bednarova L, Veverka V, Kachala M, Svergun DI, Barinka C, Sebo P",
      "journal": "Mol Cell",
      "doi": "10.1016/j.molcel.2016.03.018",
      "pmid": "27058787",
      "published_date": "2016 Apr 7"
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    "status": "released",
    "submitted_date": "2016-02-21",
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    "sample": {
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        {
          "long_name": "Adenylate cyclase toxin Block V",
          "short_name": "CyaA Block V",
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          "uniprot_range_last": null,
          "oligomerization": "monomer",
          "molecular_type": "protein",
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        "concentration_unit": "mM",
        "comment": null,
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      "name": "CyaA Block V",
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      "dry_vol": null,
      "absorbption": null,
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    "contributor": [
      {
        "affiliation": [
          {
            "short_name": "EMBL-Hamburg",
            "address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
            "full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
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  "last_modified": "2023-06-21T07:56:39.492710+02:00",
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}
查看完整 manifest.json 原文
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