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SASDBA5

Cyclohexanone monooxygenase, wild-type

数据类型：SASBDB 实验数据 状态：Published 曲线类型：Merged 最后更新：2019-12-06T13:07:15.624532+01:00
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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Cyclohexanone monooxygenase, wild-type

浓度2.25 – 9.0 缓冲液 / pH50 mM Tris / 8.0
Experimental temperature20.0 设备 / 束线Advanced Light Source (ALS) / 12.3.1 (SIBYLS)
波长0.1 nm曝光— s × 4

分子组分

组分类型 / OrganismUniProt 与Construct寡聚状态Molecular weight
Cyclohexanone monooxygenase
查看序列
GSLEASMHMTAQTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKGVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIETQVEWISDTIGYAERNGVRAIEPTPEAEAEWTETCTEIANATLFTKGDSWIFGANIPGKKPSVLFYLGGLRNYRAVMAEVAADGYRGFEVKSAEMVTV
proteinRhodococcus sp. HI-31C0STX7—–—monomer分子数 160.746 kDa

实验曲线

曲线点数 / 列q range误差质量负强度点来源文件
1471[3]0.022197–0.307984 1/A含误差列缺失 00sasbdb/entries/a5/sasdba5/source/SASDBA5.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)9.3—Å
i0Guinier457.0——
i0P(r)463.0——
mwExperimental60.75—kDa
mwGuinier I(0)69.5—kDa
porod_volumePorod110.0—ų
rgGuinier2.694—Å
rgP(r)2.743—Å

这些数值是 SASBDB 来源记录，不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

该条目没有来源拟合记录。

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”；Not declared的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称50 mM Tris缓冲液浓度—
pH8.0添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2012-10-02储存 / 测量温度— / 20.0
曝光时间—帧数4
波长0.1样品-探测器距离1.5
光源X-ray synchrotron探测器MAR 165 CCD
机构 / 束线Advanced Light Source (ALS) / 12.3.1 (SIBYLS) · Berkeley, CA, USA
q range0.222 – 3.08样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可Download文件

类别文件状态大小校验值Download与查看
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pddfsasbdb/entries/a5/sasdba5/source/SASDBA5.outdownloaded41374e92eef6753be15ea408833348c4747e5cb269916e8041691441adb34b2dacd34Download查看原文件源站
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summarysasbdb/entries/a5/sasdba5/source/summary.jsondownloaded62533a352abf7dca0b870c95e8a7453a86167757251a1dd0ec2b70cd6ec6306ce4a1Download查看原文件源站
curve：来源记录
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full_entry_zip：来源记录与 ZIP 内部目录（2 项）
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pddf：来源记录
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sascif：来源记录
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summary：来源记录
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全部来源字段（无筛选）

这里自动展开来源记录中的每一个字段，包括空值、列表成员和页面上方已展示过的字段。

summary.json：134 个字段值
字段路径原始值
codeSASDBA5
statusPublished
type_of_curveMerged
angular_unit1/A
project.titleThe role of conformational flexibility in Baeyer-Villiger monooxygenase catalysis and structure.
project.publication.titleThe role of conformational flexibility in Baeyer-Villiger monooxygenase catalysis and structure.
project.publication.author_listYachnin BJ, Lau PCK, Berghuis AM
project.publication.journalBiochim Biophys Acta
project.publication.doi10.1016/j.bbapap.2016.08.015
project.publication.pmid27570148
project.publication.published_date2016 Dec
project.statusreleased
project.submitted_date2016-08-16
project.released_date2016-09-01
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDBA5.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDBA5.dat
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intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBA5_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDBA5_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBA5_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDBA5.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.nameMAR 165 CCD
experiment.instrument.detector.resolutionnull
experiment.instrument.nameAdvanced Light Source (ALS)
experiment.instrument.cityBerkeley, CA
experiment.instrument.countryUSA
experiment.instrument.beamline_name12.3.1 (SIBYLS)
experiment.instrument.beam_geometry
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameCyclohexanone monooxygenase
experiment.sample.molecule[0].short_nameCHMO
experiment.sample.molecule[0].sequenceGSLEASMHMTAQTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKGVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIETQVEWISDTIGYAERNGVRAIEPTPEAEAEWTETCTEIANATLFTKGDSWIFGANIPGKKPSVLFYLGGLRNYRAVMAEVAADGYRGFEVKSAEMVTV
experiment.sample.molecule[0].organismRhodococcus sp. HI-31
experiment.sample.molecule[0].uniprot_codeC0STX7
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMTAQTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDT ESHLYRFSFDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDD ENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRR VGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWER AKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAA SFIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTA KGVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGLHINDHWDGQPTSYLGVSTAN FPNWFMVLGPNGPFTNLPPSIETQVEWISDTIGYAERNGVRAIEPTPEAEAEWTETCTEI ANATLFTKGDSWIFGANIPGKKPSVLFYLGGLRNYRAVMAEVAADGYRGFEVKSAEMVTV
experiment.sample.molecule[0].mw60.746
experiment.sample.molecule[0].total_mw60.746
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name50 mM Tris
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph8.0
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameCyclohexanone monooxygenase, wild-type
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_nameMcGill
experiment.contributor[0].affiliation[0].addressMontreal, Quebec, Canada
experiment.contributor[0].affiliation[0].full_nameMcGill University
experiment.contributor[0].affiliation[0].webpagehttps://www.mcgill.ca/
experiment.contributor[0].contributor_nameAlbert
experiment.contributor[0].contributor_surnameBerghuis
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2012-10-02
experiment.storage_temperaturenull
experiment.cell_temperature20.0
experiment.exposure_timenull
experiment.number_of_frames4
experiment.wavelength0.1
experiment.sample_detector_distance1.5
experiment.concentration_min2.25
experiment.concentration_max9.0
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.222
experiment.s_max3.08
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[]
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionnull
i0_calibration_standardnull
descriptionnull
experiment_descriptionnull
tags[]
intensity_unitnull
experimental_mw60.75
experimental_mw_errornull
guinier_i0_mw69.5
guinier_i0_mw_errornull
porod_mwnull
porod_mw_errornull
pddf_i0463.0
pddf_i0_errornull
guinier_i0457.0
guinier_i0_errornull
pddf_rg2.743
pddf_rg_errornull
guinier_rg2.694
guinier_rg_errornull
pddf_dmax9.3
pddf_dmax_errornull
porod_volume110.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_firstnull
guinier_point_lastnull
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDBA5_datloglog_img.png
symmetrynull
last_modified2019-12-06T13:07:15.624532+01:00
bragg_peak[]
manifest.json：36 个字段值
字段路径原始值
codeSASDBA5
statussuccess
started_at2026-08-11T14:43:03.196426+00:00
finished_at2026-08-11T14:43:11.197274+00:00
source_last_modified2019-12-06T13:07:15.624532+01:00
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查看完整 summary.json 原文
{
  "code": "SASDBA5",
  "status": "Published",
  "type_of_curve": "Merged",
  "angular_unit": "1/A",
  "project": {
    "title": "The role of conformational flexibility in Baeyer-Villiger monooxygenase catalysis and structure.",
    "publication": {
      "title": "The role of conformational flexibility in Baeyer-Villiger monooxygenase catalysis and structure.",
      "author_list": "Yachnin BJ, Lau PCK, Berghuis AM",
      "journal": "Biochim Biophys Acta",
      "doi": "10.1016/j.bbapap.2016.08.015",
      "pmid": "27570148",
      "published_date": "2016 Dec"
    },
    "status": "released",
    "submitted_date": "2016-08-16",
    "released_date": "2016-09-01"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDBA5.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDBA5.dat",
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  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBA5_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDBA5_pofr_img.png",
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  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDBA5.sascif",
  "experiment": {
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        "name": "MAR 165 CCD",
        "resolution": null
      },
      "name": "Advanced Light Source (ALS)",
      "city": "Berkeley, CA",
      "country": "USA",
      "beamline_name": "12.3.1 (SIBYLS)",
      "beam_geometry": "",
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
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          "long_name": "Cyclohexanone monooxygenase",
          "short_name": "CHMO",
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          "organism": "Rhodococcus sp. HI-31",
          "uniprot_code": "C0STX7",
          "uniprot_range_first": null,
          "uniprot_range_last": null,
          "oligomerization": "monomer",
          "molecular_type": "protein",
          "uniprot_sequence": "MTAQTTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDT\nESHLYRFSFDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDD\nENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRR\nVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWER\nAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAA\nSFIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTA\nKGVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGLHINDHWDGQPTSYLGVSTAN\nFPNWFMVLGPNGPFTNLPPSIETQVEWISDTIGYAERNGVRAIEPTPEAEAEWTETCTEI\nANATLFTKGDSWIFGANIPGKKPSVLFYLGGLRNYRAVMAEVAADGYRGFEVKSAEMVTV",
          "mw": 60.746,
          "total_mw": 60.746,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": null
        }
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        "comment": null,
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        "pka": null,
        "ph": 8.0,
        "deuteration": null
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查看完整 manifest.json 原文
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