SASDBB7

Human NEI like DNA glycosylase 1 (NEIL1) bound to DNA

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2019-12-06T13:07:15.624532+01:00

The theoretical MW for this NEIL1/DNA complex is 55.8kDa.

▼

1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Human NEI like DNA glycosylase 1 (NEIL1) bound to DNA

浓度1.3 – 2.1 缓冲液 / pH25mM HEPES 100mM NaCl 1mM DTT / 7.5
实验温度10.0 设备 / 束线Advanced Light Source (ALS) / 12.3.1 (SIBYLS)
波长1.127 nm曝光0.2 s × 24

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Endonuclease 8-like 1
查看序列
MPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLILSPLPGAQPQQEPLALVFRFGMSGSFQLVPREELPRHAHLRFYTAPPGPRLALCFVDIRRFGRWDLGGKWQPGRGPCVLQEYQQFRESVLRNLADKAFDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLELCHSVPKEVVQLGGKGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKGRRKGRQAASGHCRPRKVKADIPSLEPEGTSASLEHHHHHH
proteinHomo sapiensQ96FI4—–—monomer分子数 144.722 kDa
dsDNA
查看序列
GCGTCCAGTCTACCCGCAGGTCCAGATGG
DNA———–—monomer分子数 12.424 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1920[3]0.016445–0.528544 1/A含误差列缺失 00sasbdb/entries/b7/sasdbb7/source/SASDBB7.dat
▼

2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)17.51.6Å
i0Guinier309.02.09—
i0P(r)337.06.402—
mwExperimental61.5—kDa
mwGuinier I(0)56.90.385kDa
mwPorod54.142—kDa
porod_volumePorod92.04—ų
rgGuinier3.30.178Å
rgP(r)4.10.123Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

▼

3. 来源拟合与模型 Source Fits & Models

▶

4. 来源文件索引 Source Files

▶

5. 实验说明与论文 Experiment & Publication

▼

6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称25mM HEPES 100mM NaCl 1mM DTT缓冲液浓度—
pH7.5添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2016-01-20储存 / 测量温度4.0 / 10.0
曝光时间0.2帧数24
波长1.127样品-探测器距离1.4
光源X-ray synchrotron探测器Pilatus3 X 2M
机构 / 束线Advanced Light Source (ALS) / 12.3.1 (SIBYLS) · Berkeley, CA, USA
q 范围0.164 – 5.285样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
curvesasbdb/entries/b7/sasdbb7/source/SASDBB7.datdownloaded42470e1176de5c64cdb6dafec72483e9a6a7a1ed0635d8724537add87988350aa664e下载查看原文件源站
full_entry_zipsasbdb/entries/b7/sasdbb7/source/SASDBB7.zipdownloaded4946202df954c4a399ffc8fd2e58447a81a54bfa675d0fb339bd9364010987392322f下载查看原文件源站
pddfsasbdb/entries/b7/sasdbb7/source/SASDBB7.outdownloaded8384972d4c0555b7e1514d5ee67d65b6132076cf616849551b1bf4c900620180698fa下载查看原文件源站
sascifsasbdb/entries/b7/sasdbb7/source/SASDBB7.sascifdownloaded171149f4cd10d7fbb3a6f43c16e707135c310c5e65c9a34b94d110e270ff924dff3bba下载查看原文件源站
summarysasbdb/entries/b7/sasdbb7/source/summary.jsondownloaded7662ef7768bad408edb1784a5b6c4050729a7b4ea0544d4e31b51177d45fa611b1b3下载查看原文件源站
curve:来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/b7/sasdbb7/source/SASDBB7.dat",
  "role": "curve",
  "sha256": "e1176de5c64cdb6dafec72483e9a6a7a1ed0635d8724537add87988350aa664e",
  "size": 42470,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/intensities_files/SASDBB7.dat"
}
full_entry_zip:来源记录与 ZIP 内部目录(4 项)
{
  "path": "/data/saxsdb/sasbdb/entries/b7/sasdbb7/source/SASDBB7.zip",
  "role": "full_entry_zip",
  "sha256": "02df954c4a399ffc8fd2e58447a81a54bfa675d0fb339bd9364010987392322f",
  "size": 49462,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/zip_directories/SASDBB7.zip",
  "zip_member_count": 4,
  "zip_members": [
    {
      "crc32": "2c7a072d",
      "name": "SASDBB7/experimental_data/SASDBB7.dat",
      "size": 42470
    },
    {
      "crc32": "2e0cd2ed",
      "name": "SASDBB7/pddf/SASDBB7.out",
      "size": 83849
    },
    {
      "crc32": "f4609286",
      "name": "SASDBB7/SASDBB7_fit1.fir",
      "size": 49196
    },
    {
      "crc32": "4369955d",
      "name": "SASDBB7/SASDBB7_fit1_model1.pdb",
      "size": 15019
    }
  ],
  "zip_validation": "central_directory_readable"
}
pddf:来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/b7/sasdbb7/source/SASDBB7.out",
  "role": "pddf",
  "sha256": "72d4c0555b7e1514d5ee67d65b6132076cf616849551b1bf4c900620180698fa",
  "size": 83849,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/p_of_R_files/SASDBB7.out"
}
sascif:来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/b7/sasdbb7/source/SASDBB7.sascif",
  "role": "sascif",
  "sha256": "f4cd10d7fbb3a6f43c16e707135c310c5e65c9a34b94d110e270ff924dff3bba",
  "size": 171149,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDBB7.sascif"
}
summary:来源记录
{
  "path": "/data/saxsdb/sasbdb/entries/b7/sasdbb7/source/summary.json",
  "sha256": "ef7768bad408edb1784a5b6c4050729a7b4ea0544d4e31b51177d45fa611b1b3",
  "size": 7662,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDBB7/"
}

全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:173 个字段值
字段路径原始值
codeSASDBB7
statusPublished
type_of_curveSingle concentration
angular_unit1/A
project.titleDestabilization of the PCNA trimer mediated by its interaction with the NEIL1 DNA glycosylase.
project.publication.titleDestabilization of the PCNA trimer mediated by its interaction with the NEIL1 DNA glycosylase.
project.publication.author_listPrakash A, Moharana K, Wallace SS, Doublié S
project.publication.journalNucleic Acids Res
project.publication.doi10.1093/nar/gkw1282
project.publication.pmid27994037
project.publication.published_date2017 Mar 17
project.statusreleased
project.submitted_date2016-11-04
project.released_date2017-01-03
pddf_datahttps://www.sasbdb.org/media/p_of_R_files/SASDBB7.out
intensities_datahttps://www.sasbdb.org/media/intensities_files/SASDBB7.dat
intensities_log_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBB7_dat_img.png
intensities_kratky_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBB7_kratky_img.png
pddf_plothttps://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDBB7_pofr_img.png
intensities_guinier_plothttps://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBB7_guinier_img.png
sascif_datahttps://www.sasbdb.org/media/sascif/sascif_files/SASDBB7.sascif
experiment.instrument.detector.typenull
experiment.instrument.detector.namePilatus3 X 2M
experiment.instrument.detector.resolution172.0
experiment.instrument.nameAdvanced Light Source (ALS)
experiment.instrument.cityBerkeley, CA
experiment.instrument.countryUSA
experiment.instrument.beamline_name12.3.1 (SIBYLS)
experiment.instrument.beam_geometry
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
experiment.instrument.line_collimation_integrationwidthnull
experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameEndonuclease 8-like 1
experiment.sample.molecule[0].short_namenull
experiment.sample.molecule[0].sequenceMPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLILSPLPGAQPQQEPLALVFRFGMSGSFQLVPREELPRHAHLRFYTAPPGPRLALCFVDIRRFGRWDLGGKWQPGRGPCVLQEYQQFRESVLRNLADKAFDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLELCHSVPKEVVQLGGKGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKGRRKGRQAASGHCRPRKVKADIPSLEPEGTSASLEHHHHHH
experiment.sample.molecule[0].organismHomo sapiens
experiment.sample.molecule[0].uniprot_codeQ96FI4
experiment.sample.molecule[0].uniprot_range_firstnull
experiment.sample.molecule[0].uniprot_range_lastnull
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLIL SPLPGAQPQQEPLALVFRFGMSGSFQLVPREELPRHAHLRFYTAPPGPRLALCFVDIRRF GRWDLGGKWQPGRGPCVLQEYQQFRENVLRNLADKAFDRPICEALLDQRFFNGIGNYLRA EILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLELCHSVPKEVVQLG GKGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKS KATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKGRR KGRQAASGHCRPRKVKADIPSLEPEGTSAS
experiment.sample.molecule[0].mw44.722
experiment.sample.molecule[0].total_mw44.722
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.molecule[1].long_namedsDNA
experiment.sample.molecule[1].short_namenull
experiment.sample.molecule[1].sequenceGCGTCCAGTCTACC CGCAGGTCCAGATGG
experiment.sample.molecule[1].organismnull
experiment.sample.molecule[1].uniprot_codenull
experiment.sample.molecule[1].uniprot_range_firstnull
experiment.sample.molecule[1].uniprot_range_lastnull
experiment.sample.molecule[1].oligomerizationmonomer
experiment.sample.molecule[1].molecular_typeDNA
experiment.sample.molecule[1].uniprot_sequencenull
experiment.sample.molecule[1].mw2.424
experiment.sample.molecule[1].total_mw2.424
experiment.sample.molecule[1].number_molecules1
experiment.sample.molecule[1].complex_stateFalse
experiment.sample.molecule[1].deuterationnull
experiment.sample.molecule[1].molecule_sourcebiological
experiment.sample.molecule[1].molecule_descriptionnull
experiment.sample.buffer.name25mM HEPES 100mM NaCl 1mM DTT
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.5
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameHuman NEI like DNA glycosylase 1 (NEIL1) bound to DNA
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressBurlington, VT, USA
experiment.contributor[0].affiliation[0].full_nameUniversity of Vermont
experiment.contributor[0].affiliation[0].webpagehttps://www.uvm.edu/
experiment.contributor[0].contributor_nameKedar
experiment.contributor[0].contributor_surnameMoharana
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2016-01-20
experiment.storage_temperature4.0
experiment.cell_temperature10.0
experiment.exposure_time0.2
experiment.number_of_frames24
experiment.wavelength1.127
experiment.sample_detector_distance1.4
experiment.concentration_min1.3
experiment.concentration_max2.1
experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.164
experiment.s_max5.285
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[0].models[0].model_plothttps://www.sasbdb.org/media/pdb_file/images/SASDBB7_fit1_model1_img.png
fits[0].models[0].softwareDAMMIN
fits[0].models[0].pdb_link[]
fits[0].models[0].model_titlenull
fits[0].models[0].type_of_modeldummy
fits[0].models[0].software_version
fits[0].models[0].model_datahttps://www.sasbdb.org/media/pdb_file/SASDBB7_fit1_model1.pdb
fits[0].models[0].model_mwnull
fits[0].models[0].bead_radius4.5
fits[0].models[0].lognull
fits[0].models[0].symmetry
fits[0].models[0].comment
fits[0].models[0].user177
fits[0].fit_unit1/A
fits[0].fit_plothttps://www.sasbdb.org/media/fitting_files/scattering_plots/SASDBB7_fit1_fit_img.png
fits[0].softwarenull
fits[0].chi_square_value0.542
fits[0].p_value0.0
fits[0].fit_residual_plotSASDBB7_fit1_fitresiduals_img.png
fits[0].fit_datahttps://www.sasbdb.org/media/fitting_files/SASDBB7_fit1.fir
fits[0].fit_lognull
fits[0].software_versionnull
fits[0].descriptionnull
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionATSAS GNOM 5.0
i0_calibration_standardnull
descriptionThe theoretical MW for this NEIL1/DNA complex is 55.8kDa.
experiment_descriptionnull
tags[]
intensity_unitnull
experimental_mw61.5
experimental_mw_errornull
guinier_i0_mw56.9
guinier_i0_mw_error0.385
porod_mw54.142
porod_mw_errornull
pddf_i0337.0
pddf_i0_error6.402
guinier_i0309.0
guinier_i0_error2.09
pddf_rg4.1
pddf_rg_error0.123
guinier_rg3.3
guinier_rg_error0.178
pddf_dmax17.5
pddf_dmax_error1.6
porod_volume92.04
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first11
guinier_point_last42
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDBB7_datloglog_img.png
symmetrynull
last_modified2019-12-06T13:07:15.624532+01:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDBB7
statussuccess
started_at2026-08-11T16:37:41.140532+00:00
finished_at2026-08-11T16:37:49.873428+00:00
source_last_modified2019-12-06T13:07:15.624532+01:00
files[0].statusdownloaded
files[0].urlhttps://www.sasbdb.org/rest-api/entry/summary/SASDBB7/
files[0].path/data/saxsdb/sasbdb/entries/b7/sasdbb7/source/summary.json
files[0].size7662
files[0].sha256ef7768bad408edb1784a5b6c4050729a7b4ea0544d4e31b51177d45fa611b1b3
files[1].statusdownloaded
files[1].urlhttps://www.sasbdb.org/media/intensities_files/SASDBB7.dat
files[1].path/data/saxsdb/sasbdb/entries/b7/sasdbb7/source/SASDBB7.dat
files[1].size42470
files[1].sha256e1176de5c64cdb6dafec72483e9a6a7a1ed0635d8724537add87988350aa664e
files[1].rolecurve
files[2].statusdownloaded
files[2].urlhttps://www.sasbdb.org/media/p_of_R_files/SASDBB7.out
files[2].path/data/saxsdb/sasbdb/entries/b7/sasdbb7/source/SASDBB7.out
files[2].size83849
files[2].sha25672d4c0555b7e1514d5ee67d65b6132076cf616849551b1bf4c900620180698fa
files[2].rolepddf
files[3].statusdownloaded
files[3].urlhttps://www.sasbdb.org/media/sascif/sascif_files/SASDBB7.sascif
files[3].path/data/saxsdb/sasbdb/entries/b7/sasdbb7/source/SASDBB7.sascif
files[3].size171149
files[3].sha256f4cd10d7fbb3a6f43c16e707135c310c5e65c9a34b94d110e270ff924dff3bba
files[3].rolesascif
files[4].statusdownloaded
files[4].urlhttps://www.sasbdb.org/media/zip_directories/SASDBB7.zip
files[4].path/data/saxsdb/sasbdb/entries/b7/sasdbb7/source/SASDBB7.zip
files[4].size49462
files[4].sha25602df954c4a399ffc8fd2e58447a81a54bfa675d0fb339bd9364010987392322f
files[4].rolefull_entry_zip
files[4].zip_member_count4
files[4].zip_validationcentral_directory_readable
查看完整 summary.json 原文
{
  "code": "SASDBB7",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
  "project": {
    "title": "Destabilization of the PCNA trimer mediated by its interaction with the NEIL1 DNA glycosylase.",
    "publication": {
      "title": "Destabilization of the PCNA trimer mediated by its interaction with the NEIL1 DNA glycosylase.",
      "author_list": "Prakash A, Moharana K, Wallace SS, Doublié S",
      "journal": "Nucleic Acids Res",
      "doi": "10.1093/nar/gkw1282",
      "pmid": "27994037",
      "published_date": "2017 Mar 17"
    },
    "status": "released",
    "submitted_date": "2016-11-04",
    "released_date": "2017-01-03"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDBB7.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDBB7.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBB7_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBB7_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDBB7_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBB7_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDBB7.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "Pilatus3 X 2M",
        "resolution": 172.0
      },
      "name": "Advanced Light Source (ALS)",
      "city": "Berkeley, CA",
      "country": "USA",
      "beamline_name": "12.3.1 (SIBYLS)",
      "beam_geometry": "",
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "Endonuclease 8-like 1",
          "short_name": null,
          "sequence": "MPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLILSPLPGAQPQQEPLALVFRFGMSGSFQLVPREELPRHAHLRFYTAPPGPRLALCFVDIRRFGRWDLGGKWQPGRGPCVLQEYQQFRESVLRNLADKAFDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLELCHSVPKEVVQLGGKGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKGRRKGRQAASGHCRPRKVKADIPSLEPEGTSASLEHHHHHH",
          "organism": "Homo sapiens",
          "uniprot_code": "Q96FI4",
          "uniprot_range_first": null,
          "uniprot_range_last": null,
          "oligomerization": "monomer",
          "molecular_type": "protein",
          "uniprot_sequence": "MPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLIL\nSPLPGAQPQQEPLALVFRFGMSGSFQLVPREELPRHAHLRFYTAPPGPRLALCFVDIRRF\nGRWDLGGKWQPGRGPCVLQEYQQFRENVLRNLADKAFDRPICEALLDQRFFNGIGNYLRA\nEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLELCHSVPKEVVQLG\nGKGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKS\nKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKGRR\nKGRQAASGHCRPRKVKADIPSLEPEGTSAS",
          "mw": 44.722,
          "total_mw": 44.722,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": null
        },
        {
          "long_name": "dsDNA",
          "short_name": null,
          "sequence": "GCGTCCAGTCTACC\r\nCGCAGGTCCAGATGG",
          "organism": null,
          "uniprot_code": null,
          "uniprot_range_first": null,
          "uniprot_range_last": null,
          "oligomerization": "monomer",
          "molecular_type": "DNA",
          "uniprot_sequence": null,
          "mw": 2.424,
          "total_mw": 2.424,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": null
        }
      ],
      "buffer": {
        "name": "25mM HEPES 100mM NaCl 1mM DTT",
        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.5,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Human NEI like DNA glycosylase 1 (NEIL1) bound to DNA",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": "Burlington, VT, USA",
            "full_name": "University of Vermont",
            "webpage": "https://www.uvm.edu/"
          }
        ],
        "contributor_name": "Kedar",
        "contributor_surname": "Moharana",
        "orcid": null
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2016-01-20",
    "storage_temperature": 4.0,
    "cell_temperature": 10.0,
    "exposure_time": 0.2,
    "number_of_frames": 24,
    "wavelength": 1.127,
    "sample_detector_distance": 1.4,
    "concentration_min": 1.3,
    "concentration_max": 2.1,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.164,
    "s_max": 5.285,
    "total_exposure_time": null,
    "seccolumn": null
  },
  "fits": [
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDBB7_fit1_model1_img.png",
          "software": "DAMMIN",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "dummy",
          "software_version": "",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDBB7_fit1_model1.pdb",
          "model_mw": null,
          "bead_radius": 4.5,
          "log": null,
          "symmetry": "",
          "comment": "",
          "user": 177
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDBB7_fit1_fit_img.png",
      "software": null,
      "chi_square_value": 0.542,
      "p_value": 0.0,
      "fit_residual_plot": "SASDBB7_fit1_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDBB7_fit1.fir",
      "fit_log": null,
      "software_version": null,
      "description": null
    }
  ],
  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": "ATSAS GNOM 5.0",
  "i0_calibration_standard": null,
  "description": "The theoretical MW for this NEIL1/DNA complex is 55.8kDa.",
  "experiment_description": null,
  "tags": [],
  "intensity_unit": null,
  "experimental_mw": 61.5,
  "experimental_mw_error": null,
  "guinier_i0_mw": 56.9,
  "guinier_i0_mw_error": 0.385,
  "porod_mw": 54.142,
  "porod_mw_error": null,
  "pddf_i0": 337.0,
  "pddf_i0_error": 6.402,
  "guinier_i0": 309.0,
  "guinier_i0_error": 2.09,
  "pddf_rg": 4.1,
  "pddf_rg_error": 0.123,
  "guinier_rg": 3.3,
  "guinier_rg_error": 0.178,
  "pddf_dmax": 17.5,
  "pddf_dmax_error": 1.6,
  "porod_volume": 92.04,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 11,
  "guinier_point_last": 42,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDBB7_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2019-12-06T13:07:15.624532+01:00",
  "bragg_peak": []
}
查看完整 manifest.json 原文
{
  "code": "SASDBB7",
  "status": "success",
  "started_at": "2026-08-11T16:37:41.140532+00:00",
  "finished_at": "2026-08-11T16:37:49.873428+00:00",
  "source_last_modified": "2019-12-06T13:07:15.624532+01:00",
  "files": [
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDBB7/",
      "path": "/data/saxsdb/sasbdb/entries/b7/sasdbb7/source/summary.json",
      "size": 7662,
      "sha256": "ef7768bad408edb1784a5b6c4050729a7b4ea0544d4e31b51177d45fa611b1b3"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/intensities_files/SASDBB7.dat",
      "path": "/data/saxsdb/sasbdb/entries/b7/sasdbb7/source/SASDBB7.dat",
      "size": 42470,
      "sha256": "e1176de5c64cdb6dafec72483e9a6a7a1ed0635d8724537add87988350aa664e",
      "role": "curve"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/p_of_R_files/SASDBB7.out",
      "path": "/data/saxsdb/sasbdb/entries/b7/sasdbb7/source/SASDBB7.out",
      "size": 83849,
      "sha256": "72d4c0555b7e1514d5ee67d65b6132076cf616849551b1bf4c900620180698fa",
      "role": "pddf"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDBB7.sascif",
      "path": "/data/saxsdb/sasbdb/entries/b7/sasdbb7/source/SASDBB7.sascif",
      "size": 171149,
      "sha256": "f4cd10d7fbb3a6f43c16e707135c310c5e65c9a34b94d110e270ff924dff3bba",
      "role": "sascif"
    },
    {
      "status": "downloaded",
      "url": "https://www.sasbdb.org/media/zip_directories/SASDBB7.zip",
      "path": "/data/saxsdb/sasbdb/entries/b7/sasdbb7/source/SASDBB7.zip",
      "size": 49462,
      "sha256": "02df954c4a399ffc8fd2e58447a81a54bfa675d0fb339bd9364010987392322f",
      "role": "full_entry_zip",
      "zip_member_count": 4,
      "zip_validation": "central_directory_readable"
    }
  ]
}