SASDBC3

RepB, the replication initiator protein of a promiscuous Streptococcal plasmid pMV158

Data type: SASBDB experimental data Status: Published Curve type: Single concentration Last updated: 2023-05-25T11:22:16.556436+02:00
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1. Samples, Components and Experimental Conditions Sample & Experiment

Sample 1 · RepB, the replication initiator protein of a promiscuous Streptococcal plasmid pMV158

Concentration— – — Buffer / pH10 mM TRIS 5 mM EDTA 1.0 M KCl / 8.5
Experimental temperature— Facility / beamlineDORIS III, DESY / EMBL X33
Wavelength— nmExposure— s × —

Molecular Components

ComponentType / organismUniProt and ConstructOligomeric StateMolecular weight
Replication initiator protein of a promiscuous streptococcal plasmid pMV158.proteinStreptococcus sp.——–—hexamerMolecule count 6— kDa

Experimental Curves

CurvePoints / columnsq rangeUncertainty qualityNegative-intensity pointsSource file
12109[3]0.170147–5.05443 1/nmHas uncertainty columnMissing 00sasbdb/entries/c3/sasdbc3/source/SASDBC3.dat
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2. Measurements Reported by SASBDB Reported Results

MetricMethodValueUncertaintyUnit
dmaxP(r)10.6—nm
i0Guinier388.4——
i0P(r)3.72387.0—
mwExperimental177.0—kDa
porod_volumePorod282.0—nm³
rgGuinier3.79—nm

These values are reported by SASBDB; SAXSdb did not recalculate them from the experimental curve.

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3. Source Fits and Models Source Fits & Models

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4. Source File Index Source Files

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5. Experiment Description and Publication Experiment & Publication

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6. Complete Source Record Complete Source Record

The following content comes directly from the SASBDB entry. Missing values are shown as “—”; SAXSdb does not infer undeclared units.

Open the original SASBDB entry

Buffer and Sample Properties

Buffer name10 mM TRIS 5 mM EDTA 1.0 M KClBuffer concentration10.0 mM
pH8.5Additives5 mM EDTA, 1.0 M KCl
Buffer description—
Purity measurement method—Extinction coefficient—
Absorbance—Scattering contrast—
Specific volume / dry volume— / —Mixture / deuteration— / —

Acquisition Conditions and Instrument

Measurement date2007-06-16Storage / measurement temperature— / —
Exposure time—Frames—
Wavelength—Sample-to-detector distance—
SourceX-ray synchrotronDetectorMAR 345 Image Plate
Facility / beamlineDORIS III, DESY / EMBL X33 · Hamburg, Germany
q range0.17 – 5.054Sample volume / flow rate— / —

Original SASBDB Plots

Experimental I(q)
Experimental I(q)
Experimental I(q), log-log
Experimental I(q), log-log
Guinier plot
Guinier plot
Kratky plot
Kratky plot
P(r) plot
P(r) plot

Downloadable Files

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All source fields (unfiltered)

Every source field is expanded here, including empty values, list members and fields already shown above.

summary.json:195 field values
Field pathRaw value
codeSASDBC3
statusPublished
type_of_curveSingle concentration
angular_unit1/nm
project.titleConformational plasticity of RepB, the replication initiator protein of promiscuous streptococcal plasmid pMV158.
project.publication.titleConformational plasticity of RepB, the replication initiator protein of promiscuous streptococcal plasmid pMV158.
project.publication.author_listBoer DR, Ruiz-Masó JA, Rueda M, Petoukhov MV, Machón C, Svergun DI, Orozco M, del Solar G, Coll M
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project.publication.doi10.1038/srep20915
project.publication.pmid26875695
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project.statusreleased
project.submitted_date2016-01-20
project.released_date2016-01-22
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experiment.instrument.countryGermany
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experiment.sample.molecule[0].short_nameRepB
experiment.sample.molecule[0].sequencenull
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experiment.sample.molecule[0].uniprot_codenull
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last_modified2023-05-25T11:22:16.556436+02:00
bragg_peak[]
manifest.json:36 field values
Field pathRaw value
codeSASDBC3
statussuccess
started_at2026-08-11T13:57:09.134435+00:00
finished_at2026-08-11T13:57:22.122857+00:00
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View the complete summary.json source
{
  "code": "SASDBC3",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/nm",
  "project": {
    "title": "Conformational plasticity of RepB, the replication initiator protein of promiscuous streptococcal plasmid pMV158.",
    "publication": {
      "title": "Conformational plasticity of RepB, the replication initiator protein of promiscuous streptococcal plasmid pMV158.",
      "author_list": "Boer DR, Ruiz-Masó JA, Rueda M, Petoukhov MV, Machón C, Svergun DI, Orozco M, del Solar G, Coll M",
      "journal": "Sci Rep",
      "doi": "10.1038/srep20915",
      "pmid": "26875695",
      "published_date": "2016 Feb 15"
    },
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    "submitted_date": "2016-01-20",
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