SASDBE6

Single stranded poly-deoxyadenosine DNA (30mer, dA30)

数据类型：SASBDB 实验数据 状态：Published 曲线类型：Extrapolated to infinite dilution 最后更新：2020-08-28T15:28:04.694987+02:00

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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Single stranded poly-deoxyadenosine DNA (30mer, dA30)

浓度	0.45 – 1.8	缓冲液 / pH	1 mM Na-MOPS, 20 mM NaCl / 7.0
实验温度	—	设备 / 束线	Cornell High Energy Synchrotron Source (CHESS) / G1
波长	0.111 nm	曝光	10.0 s × 20

分子组分

组分	类型 / 物种	UniProt 与构建体	寡聚状态	分子量
Poly-deoxyadenosine (30mer) 查看序列 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	DNA—	——–—	monomer分子数 1	9.3 kDa

实验曲线

曲线	点数 / 列	q 范围	误差质量	负强度点	来源文件
1	281[3]	0.01–0.29 1/A	含误差列缺失 0	0	sasbdb/entries/e6/sasdbe6/source/SASDBE6.dat

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2. SASBDB 报告的指标 Reported Results

指标	方法	数值	误差	单位
dmax	P(r)	9.5	—	Å
i0	Guinier	66.09	0.39	—
mw	Experimental	0.0	—	kDa
rg	Guinier	2.72	0.03	Å
rg	P(r)	2.885	—	Å

这些数值是 SASBDB 来源记录，不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

拟合 1 · —

χ²：0.962CorMap p：0.032单位：1/A

拟合数据拟合图残差图

模型	名称 / 类型	软件	对称性	模型 MW	PDB 声明	来源文件
1	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
2	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
3	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
4	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
5	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
6	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
7	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
8	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
9	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
10	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
11	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
12	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
13	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
14	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
15	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
16	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
17	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
18	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
19	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片
20	—dummy	Custom in-house GAJOE1.3	—	—	—	模型图片

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4. 来源文件索引 Source Files

类别	路径	下载状态	大小
curve	sasbdb/entries/e6/sasdbe6/source/SASDBE6.dat	downloaded	5909
full_entry_zip	sasbdb/entries/e6/sasdbe6/source/SASDBE6.zip	downloaded	234900
pddf	sasbdb/entries/e6/sasdbe6/source/SASDBE6.out	downloaded	29463
sascif	sasbdb/entries/e6/sasdbe6/source/SASDBE6.sascif	downloaded	1209809
summary	sasbdb/entries/e6/sasdbe6/source/summary.json	downloaded	18310

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”；未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称	1 mM Na-MOPS, 20 mM NaCl	缓冲液浓度	—
pH	7.0	添加剂	—
缓冲液说明	—
纯度测定方法	—	消光系数	—
吸收值	—	散射对比度	—
比体积 / 干体积	— / —	混合物 / 氘代	— / —

采集条件与仪器

测量日期	2015-04-01	储存 / 测量温度	— / —
曝光时间	10.0	帧数	20
波长	0.111	样品-探测器距离	1.8
光源	X-ray synchrotron	探测器	Finger Lakes CCD
机构 / 束线	Cornell High Energy Synchrotron Source (CHESS) / G1 · Ithaca, NY, USA
q 范围	0.1 – 2.9	样品体积 / 流速	— / —

SASBDB 原始图

可下载文件

类别	文件	状态	大小	校验值	下载与查看
curve	sasbdb/entries/e6/sasdbe6/source/SASDBE6.dat	downloaded	5909	7e0903bb3acd18c5974b18c801a90b29453a14717cf7bca1072d2d21b0e9a753	下载查看原文件源站
full_entry_zip	sasbdb/entries/e6/sasdbe6/source/SASDBE6.zip	downloaded	234900	9682002174c3b7d0b77942413213e54ffb7d76bad6a29bc994f5ca187b41eaa4	下载查看原文件源站
pddf	sasbdb/entries/e6/sasdbe6/source/SASDBE6.out	downloaded	29463	5db7e9c99ad5283ab773406a87b39b6bc0dacae35cceed824ca129fa53d65180	下载查看原文件源站
sascif	sasbdb/entries/e6/sasdbe6/source/SASDBE6.sascif	downloaded	1209809	d1637590ba405e4698cf9e6cb5b1afed770de804fef55f9d34781b415d02a00b	下载查看原文件源站
summary	sasbdb/entries/e6/sasdbe6/source/summary.json	downloaded	18310	5dd36100e0079bf616c8c4a2c15f367bced25562cadaf3508f498681e5a5aabb	下载查看原文件源站

curve：来源记录

{
  "path": "/data/saxsdb/sasbdb/entries/e6/sasdbe6/source/SASDBE6.dat",
  "role": "curve",
  "sha256": "7e0903bb3acd18c5974b18c801a90b29453a14717cf7bca1072d2d21b0e9a753",
  "size": 5909,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/intensities_files/SASDBE6.dat"
}

full_entry_zip：来源记录与 ZIP 内部目录（24 项）

{
  "path": "/data/saxsdb/sasbdb/entries/e6/sasdbe6/source/SASDBE6.zip",
  "role": "full_entry_zip",
  "sha256": "9682002174c3b7d0b77942413213e54ffb7d76bad6a29bc994f5ca187b41eaa4",
  "size": 234900,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/zip_directories/SASDBE6.zip",
  "zip_member_count": 24,
  "zip_members": [
    {
      "crc32": "f54f739e",
      "name": "SASDBE6/experimental_data/SASDBE6.dat",
      "size": 5909
    },
    {
      "crc32": "3bcd39e3",
      "name": "SASDBE6/pddf/SASDBE6.out",
      "size": 29463
    },
    {
      "crc32": "9294b689",
      "name": "SASDBE6/SASDBE6_fit1.fit",
      "size": 27909
    },
    {
      "crc32": "689306a5",
      "name": "SASDBE6/SASDBE6_fit1_model1.pdb",
      "size": 49533
    },
    {
      "crc32": "42d9753d",
      "name": "SASDBE6/SASDBE6_fit1_model2.pdb",
      "size": 49533
    },
    {
      "crc32": "ecf0d711",
      "name": "SASDBE6/SASDBE6_fit1_model3.pdb",
      "size": 49533
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    {
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      "name": "SASDBE6/SASDBE6_fit1_model4.pdb",
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    {
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      "name": "SASDBE6/SASDBE6_fit1_model5.pdb",
      "size": 49533
    },
    {
      "crc32": "c5098a51",
      "name": "SASDBE6/SASDBE6_fit1_model6.pdb",
      "size": 49533
    },
    {
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      "name": "SASDBE6/SASDBE6_fit1_model7.pdb",
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    {
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    },
    {
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      "name": "SASDBE6/SASDBE6_fit1_model9.pdb",
      "size": 49533
    },
    {
      "crc32": "ebba6bbf",
      "name": "SASDBE6/SASDBE6_fit1_model10.pdb",
      "size": 49533
    },
    {
      "crc32": "caaf5897",
      "name": "SASDBE6/SASDBE6_fit1_model11.pdb",
      "size": 49533
    },
    {
      "crc32": "b3a21415",
      "name": "SASDBE6/SASDBE6_fit1_model12.pdb",
      "size": 49533
    },
    {
      "crc32": "81a4bb49",
      "name": "SASDBE6/SASDBE6_fit1_model13.pdb",
      "size": 49533
    },
    {
      "crc32": "29c728a5",
      "name": "SASDBE6/SASDBE6_fit1_model14.pdb",
      "size": 49533
    },
    {
      "crc32": "b30ca1b2",
      "name": "SASDBE6/SASDBE6_fit1_model15.pdb",
      "size": 49533
    },
    {
      "crc32": "c5bfe4da",
      "name": "SASDBE6/SASDBE6_fit1_model16.pdb",
      "size": 49533
    },
    {
      "crc32": "5d23b118",
      "name": "SASDBE6/SASDBE6_fit1_model17.pdb",
      "size": 49533
    },
    {
      "crc32": "ba154e69",
      "name": "SASDBE6/SASDBE6_fit1_model18.pdb",
      "size": 49533
    },
    {
      "crc32": "6b2b764a",
      "name": "SASDBE6/SASDBE6_fit1_model19.pdb",
      "size": 49533
    },
    {
      "crc32": "69c07a2f",
      "name": "SASDBE6/SASDBE6_fit1_model20.pdb",
      "size": 49533
    },
    {
      "crc32": "c01626d8",
      "name": "SASDBE6/SASDBE6_fit1_rg_distribution.txt",
      "size": 441
    }
  ],
  "zip_validation": "central_directory_readable"
}

pddf：来源记录

{
  "path": "/data/saxsdb/sasbdb/entries/e6/sasdbe6/source/SASDBE6.out",
  "role": "pddf",
  "sha256": "5db7e9c99ad5283ab773406a87b39b6bc0dacae35cceed824ca129fa53d65180",
  "size": 29463,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/p_of_R_files/SASDBE6.out"
}

sascif：来源记录

{
  "path": "/data/saxsdb/sasbdb/entries/e6/sasdbe6/source/SASDBE6.sascif",
  "role": "sascif",
  "sha256": "d1637590ba405e4698cf9e6cb5b1afed770de804fef55f9d34781b415d02a00b",
  "size": 1209809,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/media/sascif/sascif_files/SASDBE6.sascif"
}

summary：来源记录

{
  "path": "/data/saxsdb/sasbdb/entries/e6/sasdbe6/source/summary.json",
  "sha256": "5dd36100e0079bf616c8c4a2c15f367bced25562cadaf3508f498681e5a5aabb",
  "size": 18310,
  "status": "downloaded",
  "url": "https://www.sasbdb.org/rest-api/entry/summary/SASDBE6/"
}

全部来源字段（无筛选）

这里自动展开来源记录中的每一个字段，包括空值、列表成员和页面上方已展示过的字段。

summary.json：403 个字段值

字段路径	原始值
code	SASDBE6
status	Published
type_of_curve	Extrapolated to infinite dilution
angular_unit	1/A
project.title	Visualizing single-stranded nucleic acids in solution.
project.publication.title	Visualizing single-stranded nucleic acids in solution.
project.publication.author_list	Plumridge A, Meisburger SP, Pollack L
project.publication.journal	Nucleic Acids Res
project.publication.doi	10.1093/nar/gkw1297
project.publication.pmid	28034955
project.publication.published_date	2017 May 19
project.status	released
project.submitted_date	2016-09-06
project.released_date	2017-01-28
pddf_data	https://www.sasbdb.org/media/p_of_R_files/SASDBE6.out
intensities_data	https://www.sasbdb.org/media/intensities_files/SASDBE6.dat
intensities_log_plot	https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBE6_dat_img.png
intensities_kratky_plot	https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBE6_kratky_img.png
pddf_plot	https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDBE6_pofr_img.png
intensities_guinier_plot	https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBE6_guinier_img.png
sascif_data	https://www.sasbdb.org/media/sascif/sascif_files/SASDBE6.sascif
experiment.instrument.detector.type	CCD
experiment.instrument.detector.name	Finger Lakes CCD
experiment.instrument.detector.resolution	0.0
experiment.instrument.name	Cornell High Energy Synchrotron Source (CHESS)
experiment.instrument.city	Ithaca, NY
experiment.instrument.country	USA
experiment.instrument.beamline_name	G1
experiment.instrument.beam_geometry
experiment.instrument.type_of_source	X-ray synchrotron
experiment.instrument.point_source	null
experiment.instrument.line_collimation	null
experiment.instrument.sample_path_length	null
experiment.instrument.line_collimation_slitlength	null
experiment.instrument.line_collimation_integrationwidth	null
experiment.instrument.xray_energy	null
experiment.instrument.beam_profile_ah	null
experiment.instrument.beam_profile_al	null
experiment.sample.molecule[0].long_name	Poly-deoxyadenosine (30mer)
experiment.sample.molecule[0].short_name	dA30
experiment.sample.molecule[0].sequence	AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
experiment.sample.molecule[0].organism	null
experiment.sample.molecule[0].uniprot_code	null
experiment.sample.molecule[0].uniprot_range_first	null
experiment.sample.molecule[0].uniprot_range_last	null
experiment.sample.molecule[0].oligomerization	monomer
experiment.sample.molecule[0].molecular_type	DNA
experiment.sample.molecule[0].uniprot_sequence	null
experiment.sample.molecule[0].mw	9.3
experiment.sample.molecule[0].total_mw	9.3
experiment.sample.molecule[0].number_molecules	1
experiment.sample.molecule[0].complex_state	False
experiment.sample.molecule[0].deuteration	null
experiment.sample.molecule[0].molecule_source	biological
experiment.sample.molecule[0].molecule_description	null
experiment.sample.buffer.name	1 mM Na-MOPS, 20 mM NaCl
experiment.sample.buffer.concentration_unit	null
experiment.sample.buffer.comment	null
experiment.sample.buffer.additive	null
experiment.sample.buffer.concentration	null
experiment.sample.buffer.pka	null
experiment.sample.buffer.ph	7.0
experiment.sample.buffer.deuteration	null
experiment.sample.purity_method	null
experiment.sample.name	Single stranded poly-deoxyadenosine DNA (30mer, dA30)
experiment.sample.ext_coefficient	null
experiment.sample.contrast	null
experiment.sample.specific_vol	null
experiment.sample.dry_vol	null
experiment.sample.absorbption	null
experiment.sample.deuteration	null
experiment.sample.mixture	null
experiment.contributor[0].affiliation[0].short_name	null
experiment.contributor[0].affiliation[0].address	Ithaca, NY, United States
experiment.contributor[0].affiliation[0].full_name	Cornell University
experiment.contributor[0].affiliation[0].webpage	https://www.cornell.edu/
experiment.contributor[0].contributor_name	Alex
experiment.contributor[0].contributor_surname	Plumridge
experiment.contributor[0].orcid	null
experiment.concentration_method	null
experiment.concentration_unit	null
experiment.date	2015-04-01
experiment.storage_temperature	null
experiment.cell_temperature	null
experiment.exposure_time	10.0
experiment.number_of_frames	20
experiment.wavelength	0.111
experiment.sample_detector_distance	1.8
experiment.concentration_min	0.45
experiment.concentration_max	1.8
experiment.sample_volume	null
experiment.flow_rate	null
experiment.s_min	0.1
experiment.s_max	2.9
experiment.total_exposure_time	null
experiment.seccolumn	null
fits[0].models[0].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model1_img.png
fits[0].models[0].software	Custom in-house
fits[0].models[0].pdb_link	[]
fits[0].models[0].model_title	null
fits[0].models[0].type_of_model	dummy
fits[0].models[0].software_version	GAJOE1.3
fits[0].models[0].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model1.pdb
fits[0].models[0].model_mw	null
fits[0].models[0].bead_radius	1.9
fits[0].models[0].log	null
fits[0].models[0].symmetry
fits[0].models[0].comment	Custom SAXS model building/fitting method - state 1
fits[0].models[0].user	156
fits[0].models[1].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model2_img.png
fits[0].models[1].software	Custom in-house
fits[0].models[1].pdb_link	[]
fits[0].models[1].model_title	null
fits[0].models[1].type_of_model	dummy
fits[0].models[1].software_version	GAJOE1.3
fits[0].models[1].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model2.pdb
fits[0].models[1].model_mw	null
fits[0].models[1].bead_radius	1.9
fits[0].models[1].log	null
fits[0].models[1].symmetry
fits[0].models[1].comment	Custom SAXS model building/fitting method - state 2
fits[0].models[1].user	156
fits[0].models[2].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model3_img.png
fits[0].models[2].software	Custom in-house
fits[0].models[2].pdb_link	[]
fits[0].models[2].model_title	null
fits[0].models[2].type_of_model	dummy
fits[0].models[2].software_version	GAJOE1.3
fits[0].models[2].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model3.pdb
fits[0].models[2].model_mw	null
fits[0].models[2].bead_radius	1.9
fits[0].models[2].log	null
fits[0].models[2].symmetry
fits[0].models[2].comment	Custom SAXS model building/fitting method - state 3
fits[0].models[2].user	156
fits[0].models[3].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model4_img.png
fits[0].models[3].software	Custom in-house
fits[0].models[3].pdb_link	[]
fits[0].models[3].model_title	null
fits[0].models[3].type_of_model	dummy
fits[0].models[3].software_version	GAJOE1.3
fits[0].models[3].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model4.pdb
fits[0].models[3].model_mw	null
fits[0].models[3].bead_radius	1.9
fits[0].models[3].log	null
fits[0].models[3].symmetry
fits[0].models[3].comment	Custom SAXS model building/fitting method - state 4
fits[0].models[3].user	156
fits[0].models[4].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model5_img.png
fits[0].models[4].software	Custom in-house
fits[0].models[4].pdb_link	[]
fits[0].models[4].model_title	null
fits[0].models[4].type_of_model	dummy
fits[0].models[4].software_version	GAJOE1.3
fits[0].models[4].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model5.pdb
fits[0].models[4].model_mw	null
fits[0].models[4].bead_radius	1.9
fits[0].models[4].log	null
fits[0].models[4].symmetry
fits[0].models[4].comment	Custom SAXS model building/fitting method - state 5
fits[0].models[4].user	156
fits[0].models[5].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model6_img.png
fits[0].models[5].software	Custom in-house
fits[0].models[5].pdb_link	[]
fits[0].models[5].model_title	null
fits[0].models[5].type_of_model	dummy
fits[0].models[5].software_version	GAJOE1.3
fits[0].models[5].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model6.pdb
fits[0].models[5].model_mw	null
fits[0].models[5].bead_radius	1.9
fits[0].models[5].log	null
fits[0].models[5].symmetry
fits[0].models[5].comment	Custom SAXS model building/fitting method - state 6
fits[0].models[5].user	156
fits[0].models[6].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model7_img.png
fits[0].models[6].software	Custom in-house
fits[0].models[6].pdb_link	[]
fits[0].models[6].model_title	null
fits[0].models[6].type_of_model	dummy
fits[0].models[6].software_version	GAJOE1.3
fits[0].models[6].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model7.pdb
fits[0].models[6].model_mw	null
fits[0].models[6].bead_radius	1.9
fits[0].models[6].log	null
fits[0].models[6].symmetry
fits[0].models[6].comment	Custom SAXS model building/fitting method - state 7
fits[0].models[6].user	156
fits[0].models[7].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model8_img.png
fits[0].models[7].software	Custom in-house
fits[0].models[7].pdb_link	[]
fits[0].models[7].model_title	null
fits[0].models[7].type_of_model	dummy
fits[0].models[7].software_version	GAJOE1.3
fits[0].models[7].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model8.pdb
fits[0].models[7].model_mw	null
fits[0].models[7].bead_radius	1.9
fits[0].models[7].log	null
fits[0].models[7].symmetry
fits[0].models[7].comment	Custom SAXS model building/fitting method - state 8
fits[0].models[7].user	156
fits[0].models[8].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model9_img.png
fits[0].models[8].software	Custom in-house
fits[0].models[8].pdb_link	[]
fits[0].models[8].model_title	null
fits[0].models[8].type_of_model	dummy
fits[0].models[8].software_version	GAJOE1.3
fits[0].models[8].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model9.pdb
fits[0].models[8].model_mw	null
fits[0].models[8].bead_radius	1.9
fits[0].models[8].log	null
fits[0].models[8].symmetry
fits[0].models[8].comment	Custom SAXS model building/fitting method - state 9
fits[0].models[8].user	156
fits[0].models[9].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model10_img.png
fits[0].models[9].software	Custom in-house
fits[0].models[9].pdb_link	[]
fits[0].models[9].model_title	null
fits[0].models[9].type_of_model	dummy
fits[0].models[9].software_version	GAJOE1.3
fits[0].models[9].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model10.pdb
fits[0].models[9].model_mw	null
fits[0].models[9].bead_radius	1.9
fits[0].models[9].log	null
fits[0].models[9].symmetry
fits[0].models[9].comment	Custom SAXS model building/fitting method - state 10
fits[0].models[9].user	156
fits[0].models[10].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model11_img.png
fits[0].models[10].software	Custom in-house
fits[0].models[10].pdb_link	[]
fits[0].models[10].model_title	null
fits[0].models[10].type_of_model	dummy
fits[0].models[10].software_version	GAJOE1.3
fits[0].models[10].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model11.pdb
fits[0].models[10].model_mw	null
fits[0].models[10].bead_radius	1.9
fits[0].models[10].log	null
fits[0].models[10].symmetry
fits[0].models[10].comment	Custom SAXS model building/fitting method - state 11
fits[0].models[10].user	156
fits[0].models[11].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model12_img.png
fits[0].models[11].software	Custom in-house
fits[0].models[11].pdb_link	[]
fits[0].models[11].model_title	null
fits[0].models[11].type_of_model	dummy
fits[0].models[11].software_version	GAJOE1.3
fits[0].models[11].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model12.pdb
fits[0].models[11].model_mw	null
fits[0].models[11].bead_radius	1.9
fits[0].models[11].log	null
fits[0].models[11].symmetry
fits[0].models[11].comment	Custom SAXS model building/fitting method - state 12
fits[0].models[11].user	156
fits[0].models[12].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model13_img.png
fits[0].models[12].software	Custom in-house
fits[0].models[12].pdb_link	[]
fits[0].models[12].model_title	null
fits[0].models[12].type_of_model	dummy
fits[0].models[12].software_version	GAJOE1.3
fits[0].models[12].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model13.pdb
fits[0].models[12].model_mw	null
fits[0].models[12].bead_radius	1.9
fits[0].models[12].log	null
fits[0].models[12].symmetry
fits[0].models[12].comment	Custom SAXS model building/fitting method - state 13
fits[0].models[12].user	156
fits[0].models[13].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model14_img.png
fits[0].models[13].software	Custom in-house
fits[0].models[13].pdb_link	[]
fits[0].models[13].model_title	null
fits[0].models[13].type_of_model	dummy
fits[0].models[13].software_version	GAJOE1.3
fits[0].models[13].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model14.pdb
fits[0].models[13].model_mw	null
fits[0].models[13].bead_radius	1.9
fits[0].models[13].log	null
fits[0].models[13].symmetry
fits[0].models[13].comment	Custom SAXS model building/fitting method - state 14
fits[0].models[13].user	156
fits[0].models[14].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model15_img.png
fits[0].models[14].software	Custom in-house
fits[0].models[14].pdb_link	[]
fits[0].models[14].model_title	null
fits[0].models[14].type_of_model	dummy
fits[0].models[14].software_version	GAJOE1.3
fits[0].models[14].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model15.pdb
fits[0].models[14].model_mw	null
fits[0].models[14].bead_radius	1.9
fits[0].models[14].log	null
fits[0].models[14].symmetry
fits[0].models[14].comment	Custom SAXS model building/fitting method - state 15
fits[0].models[14].user	156
fits[0].models[15].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model16_img.png
fits[0].models[15].software	Custom in-house
fits[0].models[15].pdb_link	[]
fits[0].models[15].model_title	null
fits[0].models[15].type_of_model	dummy
fits[0].models[15].software_version	GAJOE1.3
fits[0].models[15].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model16.pdb
fits[0].models[15].model_mw	null
fits[0].models[15].bead_radius	1.9
fits[0].models[15].log	null
fits[0].models[15].symmetry
fits[0].models[15].comment	Custom SAXS model building/fitting method - state 16
fits[0].models[15].user	156
fits[0].models[16].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model17_img.png
fits[0].models[16].software	Custom in-house
fits[0].models[16].pdb_link	[]
fits[0].models[16].model_title	null
fits[0].models[16].type_of_model	dummy
fits[0].models[16].software_version	GAJOE1.3
fits[0].models[16].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model17.pdb
fits[0].models[16].model_mw	null
fits[0].models[16].bead_radius	1.9
fits[0].models[16].log	null
fits[0].models[16].symmetry
fits[0].models[16].comment	Custom SAXS model building/fitting method - state 17
fits[0].models[16].user	156
fits[0].models[17].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model18_img.png
fits[0].models[17].software	Custom in-house
fits[0].models[17].pdb_link	[]
fits[0].models[17].model_title	null
fits[0].models[17].type_of_model	dummy
fits[0].models[17].software_version	GAJOE1.3
fits[0].models[17].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model18.pdb
fits[0].models[17].model_mw	null
fits[0].models[17].bead_radius	1.9
fits[0].models[17].log	null
fits[0].models[17].symmetry
fits[0].models[17].comment	Custom SAXS model building/fitting method - state 18
fits[0].models[17].user	156
fits[0].models[18].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model19_img.png
fits[0].models[18].software	Custom in-house
fits[0].models[18].pdb_link	[]
fits[0].models[18].model_title	null
fits[0].models[18].type_of_model	dummy
fits[0].models[18].software_version	GAJOE1.3
fits[0].models[18].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model19.pdb
fits[0].models[18].model_mw	null
fits[0].models[18].bead_radius	1.9
fits[0].models[18].log	null
fits[0].models[18].symmetry
fits[0].models[18].comment	Custom SAXS model building/fitting method - state 19
fits[0].models[18].user	156
fits[0].models[19].model_plot	https://www.sasbdb.org/media/pdb_file/images/SASDBE6_fit1_model20_img.png
fits[0].models[19].software	Custom in-house
fits[0].models[19].pdb_link	[]
fits[0].models[19].model_title	null
fits[0].models[19].type_of_model	dummy
fits[0].models[19].software_version	GAJOE1.3
fits[0].models[19].model_data	https://www.sasbdb.org/media/pdb_file/SASDBE6_fit1_model20.pdb
fits[0].models[19].model_mw	null
fits[0].models[19].bead_radius	1.9
fits[0].models[19].log	null
fits[0].models[19].symmetry
fits[0].models[19].comment	Custom SAXS model building/fitting method - state 20
fits[0].models[19].user	156
fits[0].fit_unit	1/A
fits[0].fit_plot	https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDBE6_fit1_fixed_fit_img.png
fits[0].software	null
fits[0].chi_square_value	0.962
fits[0].p_value	0.032
fits[0].fit_residual_plot	fit4columns495_fitresiduals_img.png
fits[0].fit_data	https://www.sasbdb.org/media/fitting_files/SASDBE6_fit1.fit
fits[0].fit_log	null
fits[0].software_version	null
fits[0].description	null
estimated_volume_method	null
pddf_software	ATSAS GNOM
pddf_software_version	null
i0_calibration_standard	null
description	null
experiment_description	Synchrotron SAXS data from solutions of single stranded poly-deoxyadenosine DNA (30mer, dA30) in 1mM Na MOPS, 20mM NaCl, pH 7 were collected on the G1 Beamline camera on the storage ring CHESS (Ithaca, USA) using a CCD Finger Lakes CCD detector at a sample-detector distance of 1.8 m and at a wavelength of λ = 0.1 nm (I(s) vs s, where s = 4π sin θ/λ and 2θ is the scattering angle). Solute concentrations ranging between 0.5 and 1.8 mg/ml were measured . 20 successive 10 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted and the different curves were scaled for sample concentration. The low angle data collected at lower concentrations were merged with the higher concentration data to yield the final composite scattering curve.
tags	[]
intensity_unit	null
experimental_mw	0.0
experimental_mw_error	null
guinier_i0_mw	null
guinier_i0_mw_error	null
porod_mw	null
porod_mw_error	null
pddf_i0	null
pddf_i0_error	null
guinier_i0	66.09
guinier_i0_error	0.39
pddf_rg	2.885
pddf_rg_error	null
guinier_rg	2.72
guinier_rg_error	0.03
pddf_dmax	9.5
pddf_dmax_error	null
porod_volume	null
porod_volume_error	null
estimated_volume	null
estimated_volume_error	null
guinier_point_first	12
guinier_point_last	36
pddf_point_first	null
pddf_point_last	null
i0_calibration_standard_data	null
intensities_log_log_plot	SASDBE6_datloglog_img.png
symmetry	null
last_modified	2020-08-28T15:28:04.694987+02:00
bragg_peak	[]

manifest.json：36 个字段值

字段路径	原始值
code	SASDBE6
status	success
started_at	2026-08-11T15:07:39.118179+00:00
finished_at	2026-08-11T15:07:49.259240+00:00
source_last_modified	2020-08-28T15:28:04.694987+02:00
files[0].status	downloaded
files[0].url	https://www.sasbdb.org/rest-api/entry/summary/SASDBE6/
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files[0].size	18310
files[0].sha256	5dd36100e0079bf616c8c4a2c15f367bced25562cadaf3508f498681e5a5aabb
files[1].status	downloaded
files[1].url	https://www.sasbdb.org/media/intensities_files/SASDBE6.dat
files[1].path	/data/saxsdb/sasbdb/entries/e6/sasdbe6/source/SASDBE6.dat
files[1].size	5909
files[1].sha256	7e0903bb3acd18c5974b18c801a90b29453a14717cf7bca1072d2d21b0e9a753
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files[2].size	29463
files[2].sha256	5db7e9c99ad5283ab773406a87b39b6bc0dacae35cceed824ca129fa53d65180
files[2].role	pddf
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files[3].url	https://www.sasbdb.org/media/sascif/sascif_files/SASDBE6.sascif
files[3].path	/data/saxsdb/sasbdb/entries/e6/sasdbe6/source/SASDBE6.sascif
files[3].size	1209809
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files[3].role	sascif
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files[4].url	https://www.sasbdb.org/media/zip_directories/SASDBE6.zip
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files[4].zip_validation	central_directory_readable

查看完整 summary.json 原文

{
  "code": "SASDBE6",
  "status": "Published",
  "type_of_curve": "Extrapolated to infinite dilution",
  "angular_unit": "1/A",
  "project": {
    "title": "Visualizing single-stranded nucleic acids in solution.",
    "publication": {
      "title": "Visualizing single-stranded nucleic acids in solution.",
      "author_list": "Plumridge A, Meisburger SP, Pollack L",
      "journal": "Nucleic Acids Res",
      "doi": "10.1093/nar/gkw1297",
      "pmid": "28034955",
      "published_date": "2017 May 19"
    },
    "status": "released",
    "submitted_date": "2016-09-06",
    "released_date": "2017-01-28"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDBE6.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDBE6.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBE6_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBE6_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDBE6_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDBE6_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDBE6.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": "CCD",
        "name": "Finger Lakes CCD",
        "resolution": 0.0
      },
      "name": "Cornell High Energy Synchrotron Source (CHESS)",
      "city": "Ithaca, NY",
      "country": "USA",
      "beamline_name": "G1",
      "beam_geometry": "",
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "Poly-deoxyadenosine (30mer)",
          "short_name": "dA30",
          "sequence": "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA",
          "organism": null,
          "uniprot_code": null,
          "uniprot_range_first": null,
          "uniprot_range_last": null,
          "oligomerization": "monomer",
          "molecular_type": "DNA",
          "uniprot_sequence": null,
          "mw": 9.3,
          "total_mw": 9.3,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": null
        }
      ],
      "buffer": {
        "name": "1 mM Na-MOPS, 20 mM NaCl",
        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.0,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Single stranded poly-deoxyadenosine DNA (30mer, dA30)",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": "Ithaca, NY, United States",
            "full_name": "Cornell University",
            "webpage": "https://www.cornell.edu/"
          }
        ],
        "contributor_name": "Alex",
        "contributor_surname": "Plumridge",
        "orcid": null
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2015-04-01",
    "storage_temperature": null,
    "cell_temperature": null,
    "exposure_time": 10.0,
    "number_of_frames": 20,
    "wavelength": 0.111,
    "sample_detector_distance": 1.8,
    "concentration_min": 0.45,
    "concentration_max": 1.8,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.1,
    "s_max": 2.9,
    "total_exposure_time": null,
    "seccolumn": null
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          "comment": "Custom SAXS model building/fitting method - state 2",
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          "comment": "Custom SAXS model building/fitting method - state 5",
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查看完整 manifest.json 原文

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标题	Visualizing single-stranded nucleic acids in solution.
作者	Plumridge A, Meisburger SP, Pollack L
DOI / PMID	10.1093/nar/gkw1297 / 28034955