SASDBK6

Truncated construct of human p23 (1-131)

数据类型:SASBDB 实验数据 状态:Published 曲线类型:Single concentration 最后更新:2019-12-06T13:07:15.624532+01:00

Samples were measured at 1 mg/mL and 2 mg/mL in 1 mm path-length mica cells. All curves were inspected for X-ray damage and aggregation. The experimental molecular weight was determined by analytical ultracentrifugation.

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1. 样品、组分与实验条件 Sample & Experiment

样品 1 · Truncated construct of human p23 (1-131)

浓度1.0 – 2.0 缓冲液 / pH25 mM Tris-HCl, 100 mM NaCl, 5 mM B-mercaptoethanol / 7.5
实验温度20.0 设备 / 束线Brazilian Synchrotron Light Laboratory / SAXS1 Beamline
波长0.1488 nm曝光30.0 s × 2

分子组分

组分类型 / 物种UniProt 与构建体寡聚状态分子量
Prostaglandin E synthase 3 (1-131)
查看序列
GSMQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMG
proteinHomo sapiensQ151851–131monomer分子数 115.693 kDa

实验曲线

曲线点数 / 列q 范围误差质量负强度点来源文件
1451[2]0.01076235–0.36850529 1/A无误差列缺失 4510sasbdb/entries/k6/sasdbk6/source/SASDBK6.dat
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2. SASBDB 报告的指标 Reported Results

指标方法数值误差单位
dmaxP(r)7.0—Å
i0Guinier0.01633e-05—
i0P(r)0.016322e-05—
mwExperimental18.0—kDa
porod_volumePorod31.0—ų
rgGuinier1.910.06Å
rgP(r)1.9330.005Å

这些数值是 SASBDB 来源记录,不是 SAXSdb 对实验曲线重新计算的结果。

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3. 来源拟合与模型 Source Fits & Models

该条目没有来源拟合记录。

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4. 来源文件索引 Source Files

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5. 实验说明与论文 Experiment & Publication

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6. 完整来源记录 Complete Source Record

下列内容直接来自 SASBDB 条目。字段没有值时显示“—”;未声明的单位不会由 SAXSdb 猜测。

打开 SASBDB 原始条目

缓冲液与样品属性

缓冲液名称25 mM Tris-HCl, 100 mM NaCl, 5 mM B-mercaptoethanol缓冲液浓度—
pH7.5添加剂—
缓冲液说明—
纯度测定方法—消光系数—
吸收值—散射对比度—
比体积 / 干体积— / —混合物 / 氘代— / —

采集条件与仪器

测量日期2013-06-21储存 / 测量温度4.0 / 20.0
曝光时间30.0帧数2
波长0.1488样品-探测器距离1.0
光源X-ray synchrotron探测器Pilatus 300K
机构 / 束线Brazilian Synchrotron Light Laboratory / SAXS1 Beamline · Campinas, Brazil
q 范围0.108 – 3.685样品体积 / 流速— / —

SASBDB 原始图

实验 I(q)
实验 I(q)
实验 I(q) log-log
实验 I(q) log-log
Guinier 图
Guinier 图
Kratky 图
Kratky 图
P(r) 图
P(r) 图

可下载文件

类别文件状态大小校验值下载与查看
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curve:来源记录
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full_entry_zip:来源记录与 ZIP 内部目录(2 项)
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pddf:来源记录
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sascif:来源记录
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summary:来源记录
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全部来源字段(无筛选)

这里自动展开来源记录中的每一个字段,包括空值、列表成员和页面上方已展示过的字段。

summary.json:134 个字段值
字段路径原始值
codeSASDBK6
statusPublished
type_of_curveSingle concentration
angular_unit1/A
project.titleThe C-terminal region of the human p23 chaperone modulates its structure and function.
project.publication.titleThe C-terminal region of the human p23 chaperone modulates its structure and function.
project.publication.author_listSeraphim TV, Gava LM, Mokry DZ, Cagliari TC, Barbosa LR, Ramos CH, Borges JC
project.publication.journalArch Biochem Biophys
project.publication.doi10.1016/j.abb.2014.10.015
project.publication.pmid25447839
project.publication.published_date2015 Jan 1
project.statusreleased
project.submitted_date2016-09-13
project.released_date2016-10-05
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experiment.instrument.detector.resolutionnull
experiment.instrument.nameBrazilian Synchrotron Light Laboratory
experiment.instrument.cityCampinas
experiment.instrument.countryBrazil
experiment.instrument.beamline_nameSAXS1 Beamline
experiment.instrument.beam_geometry
experiment.instrument.type_of_sourceX-ray synchrotron
experiment.instrument.point_sourcenull
experiment.instrument.line_collimationnull
experiment.instrument.sample_path_lengthnull
experiment.instrument.line_collimation_slitlengthnull
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experiment.instrument.xray_energynull
experiment.instrument.beam_profile_ahnull
experiment.instrument.beam_profile_alnull
experiment.sample.molecule[0].long_nameProstaglandin E synthase 3 (1-131)
experiment.sample.molecule[0].short_namePTGES, Sba1, p23
experiment.sample.molecule[0].sequenceGSMQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRK GESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMG
experiment.sample.molecule[0].organismHomo sapiens
experiment.sample.molecule[0].uniprot_codeQ15185
experiment.sample.molecule[0].uniprot_range_first1
experiment.sample.molecule[0].uniprot_range_last131
experiment.sample.molecule[0].oligomerizationmonomer
experiment.sample.molecule[0].molecular_typeprotein
experiment.sample.molecule[0].uniprot_sequenceMQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID PNDSKHKRTDRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNF DRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE
experiment.sample.molecule[0].mw15.693
experiment.sample.molecule[0].total_mw15.693
experiment.sample.molecule[0].number_molecules1
experiment.sample.molecule[0].complex_stateFalse
experiment.sample.molecule[0].deuterationnull
experiment.sample.molecule[0].molecule_sourcebiological
experiment.sample.molecule[0].molecule_descriptionnull
experiment.sample.buffer.name25 mM Tris-HCl, 100 mM NaCl, 5 mM B-mercaptoethanol
experiment.sample.buffer.concentration_unitnull
experiment.sample.buffer.commentnull
experiment.sample.buffer.additivenull
experiment.sample.buffer.concentrationnull
experiment.sample.buffer.pkanull
experiment.sample.buffer.ph7.5
experiment.sample.buffer.deuterationnull
experiment.sample.purity_methodnull
experiment.sample.nameTruncated construct of human p23 (1-131)
experiment.sample.ext_coefficientnull
experiment.sample.contrastnull
experiment.sample.specific_volnull
experiment.sample.dry_volnull
experiment.sample.absorbptionnull
experiment.sample.deuterationnull
experiment.sample.mixturenull
experiment.contributor[0].affiliation[0].short_namenull
experiment.contributor[0].affiliation[0].addressSão Carlos - SP - Brasil
experiment.contributor[0].affiliation[0].full_nameInstituto de Química de São Carlos
experiment.contributor[0].affiliation[0].webpage
experiment.contributor[0].contributor_nameJúlio
experiment.contributor[0].contributor_surnameBorges
experiment.contributor[0].orcidnull
experiment.concentration_methodnull
experiment.concentration_unitnull
experiment.date2013-06-21
experiment.storage_temperature4.0
experiment.cell_temperature20.0
experiment.exposure_time30.0
experiment.number_of_frames2
experiment.wavelength0.1488
experiment.sample_detector_distance1.0
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experiment.sample_volumenull
experiment.flow_ratenull
experiment.s_min0.108
experiment.s_max3.685
experiment.total_exposure_timenull
experiment.seccolumnnull
fits[]
estimated_volume_methodnull
pddf_softwareATSAS GNOM
pddf_software_versionGNOM v4.5a
i0_calibration_standardnull
descriptionSamples were measured at 1 mg/mL and 2 mg/mL in 1 mm path-length mica cells. All curves were inspected for X-ray damage and aggregation. The experimental molecular weight was determined by analytical ultracentrifugation.
experiment_descriptionSynchrotron SAXS data from solutions of truncated human p23 (1-131) in 25 mM Tris-HCl, 100 mM NaCl, 5 mM β-mercaptoethanol, pH 7.5 were collected on the SAXS1 Beamline at the Brazilian Synchrotron Light Laboratory (Campinas, Brazil) using a 20Hz Pilatus 300K detector at a sample-detector distance of 1 m and at a wavelength of λ = 0.1488 nm (I(s) vs s, where s = 4π sin θ/λ and 2θ is the scattering angle). Solute concentrations ranging between 1 and 2 mg/ml were measured at 20°C. Two successive 30 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.
tags[]
intensity_unitnull
experimental_mw18.0
experimental_mw_errornull
guinier_i0_mwnull
guinier_i0_mw_errornull
porod_mwnull
porod_mw_errornull
pddf_i00.01632
pddf_i0_error2e-05
guinier_i00.0163
guinier_i0_error3e-05
pddf_rg1.933
pddf_rg_error0.005
guinier_rg1.91
guinier_rg_error0.06
pddf_dmax7.0
pddf_dmax_errornull
porod_volume31.0
porod_volume_errornull
estimated_volumenull
estimated_volume_errornull
guinier_point_first1
guinier_point_last71
pddf_point_firstnull
pddf_point_lastnull
i0_calibration_standard_datanull
intensities_log_log_plotSASDBK6_datloglog_img.png
symmetrynull
last_modified2019-12-06T13:07:15.624532+01:00
bragg_peak[]
manifest.json:36 个字段值
字段路径原始值
codeSASDBK6
statussuccess
started_at2026-08-11T16:40:41.695251+00:00
finished_at2026-08-11T16:40:49.379462+00:00
source_last_modified2019-12-06T13:07:15.624532+01:00
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查看完整 summary.json 原文
{
  "code": "SASDBK6",
  "status": "Published",
  "type_of_curve": "Single concentration",
  "angular_unit": "1/A",
  "project": {
    "title": "The C-terminal region of the human p23 chaperone modulates its structure and function.",
    "publication": {
      "title": "The C-terminal region of the human p23 chaperone modulates its structure and function.",
      "author_list": "Seraphim TV, Gava LM, Mokry DZ, Cagliari TC, Barbosa LR, Ramos CH, Borges JC",
      "journal": "Arch Biochem Biophys",
      "doi": "10.1016/j.abb.2014.10.015",
      "pmid": "25447839",
      "published_date": "2015 Jan 1"
    },
    "status": "released",
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    "released_date": "2016-10-05"
  },
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  "description": "Samples were measured at 1 mg/mL and 2 mg/mL in 1 mm path-length mica cells.\r\nAll curves were inspected for X-ray damage and aggregation.\r\nThe experimental molecular weight was determined by analytical ultracentrifugation.",
  "experiment_description": "Synchrotron SAXS data from solutions of truncated human p23 (1-131) in 25 mM Tris-HCl, 100 mM NaCl, 5 mM β-mercaptoethanol, pH 7.5 were collected on the SAXS1 Beamline at the Brazilian Synchrotron Light Laboratory (Campinas, Brazil) using a 20Hz Pilatus 300K detector at a sample-detector distance of 1 m and at a wavelength of λ = 0.1488 nm (I(s) vs s, where s = 4π sin θ/λ and 2θ is the scattering angle). Solute concentrations ranging between 1 and 2 mg/ml were measured at 20°C. Two successive 30 second frames were collected. The data were normalized to the intensity of the transmitted beam and radially averaged; the scattering of the solvent-blank was subtracted.",
  "tags": [],
  "intensity_unit": null,
  "experimental_mw": 18.0,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": null,
  "porod_mw_error": null,
  "pddf_i0": 0.01632,
  "pddf_i0_error": 2e-05,
  "guinier_i0": 0.0163,
  "guinier_i0_error": 3e-05,
  "pddf_rg": 1.933,
  "pddf_rg_error": 0.005,
  "guinier_rg": 1.91,
  "guinier_rg_error": 0.06,
  "pddf_dmax": 7.0,
  "pddf_dmax_error": null,
  "porod_volume": 31.0,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 1,
  "guinier_point_last": 71,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDBK6_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2019-12-06T13:07:15.624532+01:00",
  "bragg_peak": []
}
查看完整 manifest.json 原文
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